LOCUS       XM_002729144            2838 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus LIM homeobox 3 (Lhx3), transcript
            variant X2, mRNA.
ACCESSION   XM_002729144
VERSION     XM_002729144.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001426997.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002729144.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2838
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2838
                     /gene="Lhx3"
                     /note="LIM homeobox 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 11 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:170671"
                     /db_xref="RGD:71078"
     CDS             643..1845
                     /gene="Lhx3"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx3 isoform X2"
                     /protein_id="XP_002729190.1"
                     /db_xref="GeneID:170671"
                     /db_xref="RGD:71078"
                     /translation="MLLEAELDCHREQPGAPGAAALCTFSRTPEIPMCAGCDQHILDR
                     FILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPP
                     TQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATA
                     KRPRTTITAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRL
                     KKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSDAEVSFTDEPSMADMGTANGLY
                     SSLGEPAPALGRPVGGLGSFTLEHGGLAGPEQFRELRPGSPYGIPPSPAAPQSLPGPQ
                     PLLSSLVYPDTNLGLVPSGPPGGPPPMRVLAGNGPSSDLSTESSGGYPDFPASPASWL
                     DEVDHAQF"
ORIGIN      
        1 ggaatgagaa tcaactgtgc tgagagctgc aggactccga gcctttgtca acacaggaga
       61 ggaaacagtg caagtgcctc ctcacactgt ttccaagccc acagacagga ctctagaccc
      121 cgagctgggg aagaccagcc agtcagtcta gaagctgctg agcttctcac caaatttccc
      181 tcccatttgt tcccagtctg gggcagataa ggctttagaa cccggaatct gttccaccag
      241 gggagggcag tcccaggcta acagcccaga ggctcccaaa cccgtgtact acgaacatag
      301 cacctctagc caaggcccag agcccagggc cgaacaagtt ggagccacta tgctactctg
      361 ataggtaaag ggagtcctga gaaagggcaa gcacacattc tagactagtc aaatccagcc
      421 ctggagtgtc gccagcctga ctccgcctgt ccgcctgccg gggcctgcaa ggggccaagg
      481 gcggggacag aggaggggcg gggcaggctg gtgaaggtcc ccaacaggct agtgcctcct
      541 tcagcaccgc ggacagcgcc agctcaatga gtaggccaag gcctgaaaca ggtccagcac
      601 tccagggaac acccagcagg aaccactgga ttagtgacta ccatgctgtt agaagcggaa
      661 ctcgattgcc accgagagca gcccggtgcc cctggagctg ctgccctctg taccttcagc
      721 aggactccag agatccccat gtgcgcggga tgtgaccagc acatcttgga ccgtttcatc
      781 ctaaaggctc tggaccgaca ttggcacagc aagtgtctca agtgcagtga ctgccacgtg
      841 cctctggctg agcgctgctt cagccgcggg gagagcgtct actgcaaaga cgacttcttt
      901 aagcgcttcg ggaccaagtg cgccgcatgc cagctgggca tcccgcccac gcaggtggtg
      961 cggcgcgccc aggacttcgt gtaccacctg cattgcttcg cctgcgtggt ttgcaagcgg
     1021 cagctggcca cgggggacga gttctacctc atggaagaca gccggctggt gtgcaaggcg
     1081 gactacgaaa cagccaagca gcgagaagcc gaggccacag ccaagcggcc gcgcaccacc
     1141 atcaccgcca agcagctgga gacgctgaag agcgcctaca acacctcgcc caagccggcg
     1201 cgccacgtgc gcgagcagct ctcctccgag accggcctgg acatgcgcgt ggtgcaggtg
     1261 tggttccaga accgccgggc caaggaaaag agactgaaga aagacgcagg ccggcagcgc
     1321 tggggacagt atttccgcaa tatgaagcgc tcccgcggca gctccaagtc cgacaaggac
     1381 agcatccagg agggacagga cagcgacgcg gaagtctcct tcactgatga gccgtccatg
     1441 gctgacatgg ggactgctaa tggcctgtac agcagcctgg gagagcctgc ccctgcgttg
     1501 ggccggcctg taggaggcct gggcagcttt acattggagc acggaggttt ggcaggtcca
     1561 gagcagtttc gagagctgcg tccaggcagc ccctatggca tcccaccatc tcctgcggcc
     1621 ccacagagcc ttcccggccc ccagcctctc ctctccagcc tggtataccc agacaccaac
     1681 ttgggccttg tcccttcggg gcctccaggt gggcccccac ccatgagggt gctggctgga
     1741 aatggaccca gctctgacct ctccacagag agcagtggtg gctacccaga ctttcctgct
     1801 agccctgcct cctggctgga tgaagtagac catgctcagt tctgaccgag ggccccccag
     1861 ttcccttggc tctaactcag gggtcttggt gctgcctctg ggtgggcagc tagccccacc
     1921 ccatgatgtc catttcaagg acctctgagg gaaggacagg gttcccacgt gagagaatag
     1981 agactgtccc acttccagct tctctggctg ctccctgggg ctgagggact ccatagccct
     2041 tccttggaca caagcgtagc ctgcctcgtg ggcggctaca agccagtgat tcttgaccgt
     2101 tctggtaagc attgttctcc ctttatcagc cagtgaactc ttgctgctat tttccacagg
     2161 gcaggaggcc aggccctacc tagtgtcctg gcataaaaca atagtaacaa cttgcgtcat
     2221 cacttctgat gggcttggta ggagactgtg ctcggccagc cgtgcctggt cactgacctc
     2281 tcctcccagc tgccagctct cctgacctgg agtctccagg tctttctgtt ctggaatgca
     2341 atgcgttggg gagtggagct ttctggaacc ccttctccaa ggtgtagtct ttaaacgtga
     2401 agacaattcc ctttctcctg aggcacagcc tccctcaggt gcagagcaga aatgtgcagc
     2461 aaggacagac accgttgcca aacagactgt ggtcctgtgc agggggtggg gtgttctgtc
     2521 agcccagacc aggagacctc ccccactgga ggaggttggg ctgggggggt cctcccaatc
     2581 cagtctgtct cagacacaaa gcttggccat gtgtcagtta aagtcactcc tgaaaaccag
     2641 gatcttggct acctgttggt tctgtaaaca tcctgtgact tttatttatt ccccggtgat
     2701 ccgctctttc caagacttca ataaatttgt cagtttccat gctagaaggc ctgtgttttt
     2761 agtgagcctg gagctctggc tgagattgtc gcatggggct gagggcatcc tctcagaggg
     2821 tagtggtgct ggcgctaa
//
