LOCUS       XM_008761742            1931 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus LIM homeobox 2 (Lhx2), transcript
            variant X3, mRNA.
ACCESSION   XM_008761742
VERSION     XM_008761742.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761742.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761742.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1931
                     /gene="Lhx2"
                     /gene_synonym="Lh-2; LH2A"
                     /note="LIM homeobox 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:296706"
                     /db_xref="RGD:71076"
     CDS             186..1307
                     /gene="Lhx2"
                     /gene_synonym="Lh-2; LH2A"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx2 isoform X2"
                     /protein_id="XP_008759964.1"
                     /db_xref="GeneID:296706"
                     /db_xref="RGD:71076"
                     /translation="MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKL
                     NLESELTCFSKDGSIYCKEDYYSPSLHGPHRRFSVQRCARCHLGISASEMVMRARDLV
                     YHLNCFTCTTCNKMLTTGDHFGMKDSLVYCRLHFEALLQGEYPAHFNHADVAAAAAAA
                     AAAKSAGLGSAGANPLGLPYYNGVGTVQKGRPRKRKSPGPGADLAAYNAALSCNENDA
                     EHLDRDQPYPSSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRV
                     LQVWFQNARAKFRRNLLRQENTGVDKTSDATLQTGTPSGPASELSNASLSPSSTPTTL
                     TDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQTTLTNLF"
ORIGIN      
        1 gggcgccaga ctcaggggaa acccggttgc tagagcggag gagggagtca aggttgaaac
       61 ccagatctgg accgcgaggg tggaggagaa cgttgttcta gaagtggaag cgcgaggcca
      121 ctctcttctc tctgctcctg gcgctccagt ccacagtcct gactctccac cactactagg
      181 ctaccatgcc gtccatcagc agtgaccggg cagcgttgtg tgcgggctgt gggggcaaga
      241 tctctgaccg ctactatttg ctggcagtag acaaacaatg gcacatgcgt tgcctcaagt
      301 gctgtgaatg caagctcaac ctggagtcgg aactcacctg cttcagcaag gatggcagca
      361 tctactgcaa agaagactac tacagcccct ccctccatgg tccccacagg cggttctctg
      421 tgcagcgctg cgcccgctgc cacctgggca tctcggcctc agagatggtg atgcgtgctc
      481 gggacttggt ttatcacctc aactgcttca catgcaccac gtgtaacaag atgctgacga
      541 ccggcgacca cttcggcatg aaggacagcc tggtctattg ccgcttgcac ttcgaggcac
      601 tgctgcaagg cgaatacccg gcacacttta accatgccga cgtggcagcg gcggcagcgg
      661 cagccgcagc agctaagagt gcaggattgg gctcagctgg ggctaacccg ctgggtcttc
      721 cctactacaa cggcgtgggc actgtgcaga aggggaggcc gagaaagcgc aaaagtccag
      781 gacccggggc agatctggca gcctacaacg ccgcgctgag ctgtaacgag aacgacgcgg
      841 aacacctgga tcgcgaccag ccctacccta gcagccaaaa gacaaagcgc atgcgcacct
      901 ccttcaagca ccaccagctt cggacaatga agtcttactt tgccattaac cacaatcccg
      961 atgccaagga cttgaagcag ctcgcgcaaa agaccggcct caccaagaga gtcctccagg
     1021 tctggtttca gaatgcccgg gccaagttca ggcgcaacct tttacggcag gaaaacactg
     1081 gtgtggacaa gacttcggat gccacgctgc agacagggac accgtcaggg cccgcctcgg
     1141 agctgtccaa cgcctcgctc agcccctcca gcactcctac aaccctcaca gacttgacta
     1201 gccccaccct gccgactgtg acgtcagtct taacttctgt gcctggcaac ctggagggcc
     1261 atgagcccca cagcccttca caaacgactc ttaccaacct tttctaatga ctcgccaccc
     1321 ccttctcccc tgagccccca tgatttcttt aaaaaagaaa ttatctttag ttgaattcca
     1381 agtgtatttt aaaaatagcg gtttgagcaa ctaactaacc acgttttagg atctcgcctg
     1441 gaaacagagg gggaaaaaag aattgtgcgt cgggctaacg cagcggtgtg tgctgaggaa
     1501 ttacttggga gatatatctg caacacaaca tttgtgtccc tgtacagttt tgtggactga
     1561 gcgaggaaaa caacaaataa tttaagttgg ctgagagctt ccgtattttc aaagactgcc
     1621 acgtgcctta ggaatactgt tttatcttca tactttggat gaattgttcg tttttttttc
     1681 tctccctctt tttctctctg tatatttatg accagagcaa aatgtaaaaa aggaaaaaaa
     1741 aacaaaaaaa caaaaaaagt ttgttacttt gaatagtcct aaagaagaaa aagaaaaaaa
     1801 aaaaaaaaca aggaaaaaaa tcaaatcccc tccaacagtc gctttcttgt tttagaattt
     1861 taaggtggaa gtctgttcgg atatcagaat ttgtaaaacc taaccagtaa taaaatcact
     1921 tatcgaaaag a
//
