LOCUS       NM_001109183            2084 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus LHFPL tetraspan subfamily member 6 (Lhfpl6),
            mRNA.
ACCESSION   NM_001109183 XM_001057282 XM_574941
VERSION     NM_001109183.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CH474003.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001057282.1, XM_574941.2.
            
            ##Evidence-Data-START##
            CDS exon combination :: BC091355.1, CO403392.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5756307, SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q26"
     gene            1..2084
                     /gene="Lhfpl6"
                     /gene_synonym="Lhfp; RGD1560177"
                     /note="LHFPL tetraspan subfamily member 6"
                     /db_xref="GeneID:499615"
                     /db_xref="RGD:1560177"
     exon            1..234
                     /gene="Lhfpl6"
                     /gene_synonym="Lhfp; RGD1560177"
                     /inference="alignment:Splign:2.1.0"
     exon            235..805
                     /gene="Lhfpl6"
                     /gene_synonym="Lhfp; RGD1560177"
                     /inference="alignment:Splign:2.1.0"
     CDS             421..1023
                     /gene="Lhfpl6"
                     /gene_synonym="Lhfp; RGD1560177"
                     /EC_number="3.6.5.4"
                     /note="lipoma HMGIC fusion partner; LHFPL tetraspan
                     subfamily member 6 protein"
                     /codon_start=1
                     /product="LHFPL tetraspan subfamily member 6 protein
                     precursor"
                     /protein_id="NP_001102653.1"
                     /db_xref="GeneID:499615"
                     /db_xref="RGD:1560177"
                     /translation="MASSLTCTGVIWALLSFLSAATSCVGFFMPYWLWGSQLGKPVSF
                     GTFRRCSYPVHDESRQMMVMVEECGRYASFQGIPSTEWRICTIVTGLGCGLLLLVALT
                     ALMGCCVSELISRTVGRVAGGIQFLGGLLIGAGCALYPLGWDSEEVRQTCGYISDQFD
                     LGKCEIGWAYYCTGAGAAAAMLLCTWLACFSGKKQKHYPY"
     exon            806..904
                     /gene="Lhfpl6"
                     /gene_synonym="Lhfp; RGD1560177"
                     /inference="alignment:Splign:2.1.0"
     exon            905..2084
                     /gene="Lhfpl6"
                     /gene_synonym="Lhfp; RGD1560177"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccggcatcc acggtgctcc cgggccgcac cgccacagcc ggcgggctct ccaggcgggt
       61 cctcctgacc ctccaccccg gctctcagac tcgccttgat ctccgtcggg atagtgtcga
      121 aggcgaaaaa gacagtcttc ggtgccgcgt tgtctccgcc agggaaagac agcaagttgt
      181 gctgcgcctg ggaccgcgag ggaccgggag ggaccgcggc cgccgcccga ccgggggccg
      241 ccatcattac cataaagcat gagaagctaa tcgaggcaag accaaaagat ctgttgcagc
      301 caagtagcta caaaggcctt gaagaactgt ggactccccg ggagtttctg gtgaccacac
      361 gccttccttc acaccttcgg gacgatccca ctgggtcctc gttgcactgc atgttggaaa
      421 atggcatcca gcctgacttg tactggagtg atctgggctt tgctttcttt cctttccgct
      481 gccacatcct gtgtggggtt cttcatgcct tactggctct ggggatctca gctaggcaag
      541 cccgtgtcct ttggcacttt ccggaggtgc tcctatcccg tacacgatga gagtcggcag
      601 atgatggtga tggtggagga gtgtgggcgc tatgcttcct tccagggcat ccccagcacc
      661 gagtggagga tctgtaccat agtgacaggc ctgggctgtg gcctgctcct cctggtggct
      721 ctcactgccc ttatgggttg ctgcgtgtca gagctcatct ccaggacagt aggaagagtg
      781 gctgggggaa tccagttcct ggggggcctg ttgattggcg ctggctgtgc cctctacccc
      841 ttgggctggg acagtgagga agtccggcag acttgtggct acatctctga ccagtttgac
      901 ttgggcaagt gtgaaatcgg ctgggcctac tactgcaccg gggccggggc tgcagctgcc
      961 atgctgctgt gcacatggct ggcgtgcttc tcaggcaaga agcaaaagca ctacccctac
     1021 tgaggccatg aggagcaagc tgaggagagg acagacacca gagacggagg ggcccgaagc
     1081 attccgcgac tttcacaagg tggaatagtg gttgtaaatg cagaacagtg ttaatgtaat
     1141 gagatttggt tgaatctgga acattctgta ggaagggagg gtggtgggga cattgtcaaa
     1201 agcatggaga ataggggacg atggaccaaa ggctaaaaca tggcaggaca ttggtgtttc
     1261 tgttccacag agtagcgtta atgtatatca cacacagcaa atctatatat gcaaacgagg
     1321 atctcatttt cgttctcctt caaaaagatg aggactaggg gagtcaaaag ggctagtaga
     1381 aacagtatta tcttaggaag caggatgagc accctgcaga cattccctgt agatgaggac
     1441 tgagcctgaa agcacatgag cacgtgcaca catatgcaca catatgcaca catgtgcaca
     1501 catatgcaca ggtcatatgc acacatcata ttcacacatc acatgcacac accatatgca
     1561 caagtcatat gcatacatcg aaagcatacg tcacacacac aggtcaccac gccactgcac
     1621 agggggtcag ctgtgtactg ttgctcctgt ttcttttttt aaaatataca tcagtacagc
     1681 atcatcgcca agcatacatt gagcctagtc catggaccaa tatgccactg tatcagtatt
     1741 tttgatgtcc tgcataaacc atgcccacag catatctttg gtgtttatgc agatccttag
     1801 aggaaagcct tcgcatttca aagacaccca gtagtgatct gagtagcttc tgctgtagta
     1861 accttttgaa gaacaggaca gcttttgtct cctgtaggtg agaattcagt tgcagatttg
     1921 agagtgaaga gagctctttc tccatttatt ggatcttctt ttcttttctc cattattcta
     1981 ctgtgctata ccacaattat ttcaatattc attttgtaaa gggaaaaaaa agtactattt
     2041 tgtttgtatt tgaaagctct gtgaataaat tctctttgat caat
//
