LOCUS       XM_039081997            3257 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich repeat LGI family, member
            4 (Lgi4), transcript variant X2, mRNA.
ACCESSION   XM_039081997
VERSION     XM_039081997.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3257
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3257
                     /gene="Lgi4"
                     /note="leucine-rich repeat LGI family, member 4; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 69 long SRA reads"
                     /db_xref="GeneID:361549"
                     /db_xref="RGD:735035"
     CDS             598..1509
                     /gene="Lgi4"
                     /codon_start=1
                     /product="leucine-rich repeat LGI family member 4 isoform
                     X2"
                     /protein_id="XP_038937925.1"
                     /db_xref="GeneID:361549"
                     /db_xref="RGD:735035"
                     /translation="MVLAQPFAGRCLILVWDYSLQRFRSEEELSAPSVVSCKPLVLGP
                     RLFILAARLWGGSQLWSRSSPDLRLTPVQVLAPQRLLRPNDAELLWLDGQPCFVVADA
                     SKAGSTTLLCRDGPGFYPRQSLHAWHRDTDAEALELDGRPHLLLASASQRPVLFHWFG
                     GRFERRTDIPEAEDVYATKHFQAGGDVFLCLTRYIGDSMVMRWDGSMFRLLQQLPSRG
                     SHVFQPLLIASDQLAILGSDFAFSQVFRFEPDKGILEPLQELGPPALVAPRAFGQVTV
                     AGRRFLFAACFKGPTQIYQHHELDLSA"
     polyA_site      3257
                     /gene="Lgi4"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cctcttcacg tccaatacct tctctgtaat tgagggtgat gccttcatcg gcctgtccta
       61 cctgcagtac ctcttcattg aggacaacaa gatcggctcc atctctaaga acgccctgag
      121 gggactccgc tcactgaccc acctgtgtgt atctgcacag tccagacctc cactgtaggc
      181 agcccgaccc accctcaagg ccatagcgtc ttctggccct ggctgacact ctttcctctc
      241 cccgctccat cagaagcctg gccaacaacc accttgaggc tctacccaga ttcctgttcc
      301 aaggcttgga gactctgact catgtggacc tccgtggtaa cccgttccag tgtgactgcc
      361 gagtactttg gttgctacag tggatgccta tggtgaatgc cagtgtgggc acgggggcct
      421 gtgcgggccc ctctgcactt gctcaaatac aactgaatca cctcgaccct aagaagttca
      481 agtgtaaagc cacaggcacc cctgactctc ttgctgcccc tagaactctc ctggctccag
      541 actgttgggg agtcggcact gagcgtggag tccttctcct atcaggggga acctcacatg
      601 gtcctggcac agcccttcgc tggccgttgc ctgatcctgg tgtgggacta cagcctgcag
      661 cgcttcaggt ctgaggaaga gctgtccgcg ccctcagtgg tgtcctgcaa acctctggtg
      721 ctgggcccac gcctcttcat actggctgct cgcctatggg gaggctcaca gctgtggtca
      781 cggtccagcc ccgacctgcg tctgacccct gtgcaagtcc tagcccctca acggctgctg
      841 cgacccaatg atgccgagct cctgtggctg gatgggcagc cctgcttcgt ggtggctgat
      901 gcttccaagg ctggcagcac cacgctgctg tgtcgtgatg ggccgggctt ctacccacgc
      961 cagagcctgc acgcctggca ccgcgacacc gatgcagagg ccctggagct ggacggccga
     1021 ccgcacctgt tgcttgcttc cgcctcccag aggcctgtgc tctttcactg gtttggtggc
     1081 cgattcgaga ggcgcacaga catcccagag gcagaggacg tctatgccac aaaacacttt
     1141 caggcgggag gagacgtgtt cctgtgcctg actcgataca ttggggactc catggtcatg
     1201 cgctgggacg gctccatgtt ccgtctgctg cagcaacttc catctcgagg ctcccatgtc
     1261 ttccagccac tactaattgc cagcgaccag ttggccattc tgggcagcga cttcgccttc
     1321 agccaagtct tccgctttga gcccgataaa gggatcctgg agccactaca ggagctgggc
     1381 ccaccggcct tggtggcccc ccgagccttt ggccaagtca ctgtagcagg aagacgcttt
     1441 ttattcgcag cgtgcttcaa ggggcccacg cagatctacc agcaccatga gttggatctc
     1501 agtgcctgag gctgggaaag accctggaag tggctatggg actggcaagg gcattctggg
     1561 acatctgggt aacctctctg ggctggcctc ctggatgtca cagacagtcc tgggtgatac
     1621 agaccacaag ccaagtgcat cagcctgagt taggcttagt ccacttttcg gaggatctgt
     1681 acctaagggg caagtgggag gtctctttac tcccaactat gtttagggcc cctccagtct
     1741 gaagccacat ttgggctgag gacagatgct cccatgcaca acatcttggg agttcctcct
     1801 ggaacacaac ttggagctgg gatacagaaa ctaaaagggc aatctgctga gctccaagag
     1861 gtttggacac cccgccctca acgtcccctt ggtcctgctg catataaaga accgagagag
     1921 agcattagtt ccactcaaac cctatctggc cattggtttc gtggagtatg cgtctctgtg
     1981 acgtcacagt tgctgggcag tttcttggcc tggtactctg ctgcctgtgc gcatgcctgg
     2041 tactttgctg cccgtgcgca tgtctatttc cgaagactga ttgcttttac acgtgtgcag
     2101 taaaagtgaa gcagcgaaga tgaagtctag aggcgtcaca gagagcactg ggtacctttt
     2161 tccagaatgt gacaggggca agaacaggga gtgtatgaat tcaataaatg ccccgcgcac
     2221 ccaacctgcc cgctctgtgg tctcaaggcg ggagcctctt gttgagtggc aggtgaaaac
     2281 cctggatggg atcttgggca ggaattttgg tttgaaaggt tttaggcatt ttctgtgatt
     2341 gcacttagat tctggaggct ctgatggata ctgaggagcc tcaagagagc tgggggtcag
     2401 tggaggatct cacagtgtgg ccactgctgg actatcggcg gtgttctgag aaattacagg
     2461 tctcacaggt gaatggaagg gtctcatgat aaagtggggt catctcaact gcaggggtgg
     2521 ggacagctaa atatcggggt ggccccaata tggtgtgatg accccacggt gtagtttttc
     2581 gcaatgtcac ccagtgtccc tacactgcgt gagattaggg ctctttttca ctcccgcaag
     2641 tgtccctcgt ttgccactag aacttaagtg gcacaggagg ctgcccatgg agggaaaggg
     2701 caaatctcat gcccaccata aggccatgac gtgcaggtct aagcatgatt cagccatcag
     2761 ctcctgctca ttaacctgcc ccatcgaggc cccaaggtcc accccagcat ctgctcacct
     2821 cctcgctgcc ggcagccaca ctccaagctc cacacagagt ctctggctcg cctgagcatg
     2881 acgtaaaatc attttatatt aacaactgaa caaagaacct gctaccatga gatgaggctc
     2941 ggggaaggca gtgtcaggag aggaggagcc cagacatctt ggagttcaag cccatctcca
     3001 gagacaggac ctgcactttt ttaactgatc catcctcagc agttgtgagc agagcctggt
     3061 agagggaatg gagtcagttt gcaagcatct cccctttcct tctccctgac tcaggcacgc
     3121 tcccactcca gcttccacta gtgaccatta cccccacgtg tcacccccaa tcatcctgtg
     3181 tcatacctgg tgtgatgagg ggtggcccat ctcctggacg gtggctaagg aaataaacgg
     3241 aataatatgt aaataaa
//
