LOCUS       NM_001122781            2448 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus LETM1 domain containing 1 (Letmd1), mRNA.
ACCESSION   NM_001122781 XM_001061371 XM_001064669
VERSION     NM_001122781.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2448)
  AUTHORS   Ha SA, Lee YS, Shin SM, Kim HK, Kim S, Namkoong H, Kim HJ, Jung SM,
            Lee YS, Chung YJ, Jung SS and Kim JW.
  TITLE     Oncoprotein HCCR-1 expression in breast cancer is well correlated
            with known breast cancer prognostic factors including the HER2
            overexpression, p53 mutation, and ER/PR status
  JOURNAL   BMC Cancer 9, 51 (2009)
   PUBMED   19208263
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2448)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   3  (bases 1 to 2448)
  AUTHORS   Ko J, Lee YH, Hwang SY, Lee YS, Shin SM, Hwang JH, Kim J, Kim YW,
            Jang SW, Ryoo ZY, Kim IK, Namkoong SE and Kim JW.
  TITLE     Identification and differential expression of novel human cervical
            cancer oncogene HCCR-2 in human cancers and its involvement in p53
            stabilization
  JOURNAL   Oncogene 22 (30), 4679-4689 (2003)
   PUBMED   12879013
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB778986.1, BC159426.1, DN933141.1, CO573012.1 and BQ204198.1.
            
            On or before Sep 11, 2008 this sequence version replaced
            XM_001061371.1, XM_001064669.1, NM_001122781.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                CB778986.1         23-41
            20-1042             BC159426.1         1-1023
            1043-1471           DN933141.1         265-693
            1472-1814           CO573012.1         386-728
            1815-2448           BQ204198.1         1-634               c
FEATURES             Location/Qualifiers
     source          1..2448
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..2448
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /note="LETM1 domain containing 1"
                     /db_xref="GeneID:681352"
                     /db_xref="RGD:1596738"
     exon            1..152
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..1113
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /codon_start=1
                     /product="LETM1 domain-containing protein 1"
                     /protein_id="NP_001116253.3"
                     /db_xref="GeneID:681352"
                     /db_xref="RGD:1596738"
                     /translation="MALSRVCWSRAALWGSTVAPGPFVTRRLQLGRSGPAWRAPRSSK
                     LHLSPKADVKNLISYVVTKTRAINGTYHRFLGRHFPRFYALYTTFIKGIQMLWADAKK
                     ARRIKADMWKQNLKFHQLSYREMEHLRQFRRDITKCLFIGLISIPPFANYLVFLLMYL
                     FPRQLLVKHFWTPKQQIDFLDIYHGFRRRSHLEIITHLRRASALVSNEKLRWHLEDLC
                     TKVQNGTHPTAQDILALRDCFSTYPLGFSQLQASQMRALSQAMLLTPYLPPPLLRWRL
                     KSHTAVIHQLDRALAKLGTGHLTPQEVRSACYLRGLNSTHTSDDRCRTWLGEWLHISC
                     SLKEAELSLLLHNVVLLSTNYLETRR"
     exon            153..304
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     exon            305..420
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     exon            421..503
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     exon            504..690
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     exon            691..792
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     exon            793..945
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     exon            946..1042
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..2431
                     /gene="Letmd1"
                     /gene_synonym="RGD1310591"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtctcccct ctccctcccc gcctgtgaag atggcgctgt ccagggtgtg ctggtctcgg
       61 gctgctctgt ggggttcgac cgtcgcccct ggaccctttg tcacccggag gctgcagttg
      121 ggccgctctg gccctgcgtg gcgagcccct cggtcttcaa agcttcacct ttctccaaag
      181 gcggacgtga agaacttgat ttcttacgtg gtgaccaaga cgagggcgat taacggaacg
      241 taccaccgtt tcttggggcg tcacttcccc cgcttctatg ccttgtacac aaccttcata
      301 aaaggaatac agatgttatg ggctgatgcc aaaaaggcta gaagaataaa ggcagacatg
      361 tggaaacaaa atctaaagtt tcatcaactc tcttaccggg agatggagca tttgagacag
      421 ttccgacgag atatcaccaa gtgtctcttc ataggcctca tctccattcc accctttgcc
      481 aactacctgg tcttcttgct aatgtacctg tttcctaggc aactgcttgt caagcatttc
      541 tggaccccca aacaacaaat tgacttcttg gacatttatc atggtttccg gaggcggtcc
      601 cacttggaaa tcatcacgca tctcagaagg gctagcgctt tggtttctaa tgagaagctc
      661 cggtggcatc tggaggacct gtgtaccaag gtgcagaatg gcacccaccc aacggcacag
      721 gacatcctgg ctctcagaga ctgcttctct acctatccct tgggcttcag ccagctccag
      781 gcttctcaaa tgagagcctt gagccaggcc atgctgctca caccttacct gcccccgcct
      841 ttgctgaggt ggcgtctgaa gagccacacc gctgtgattc accagctgga ccgggctctg
      901 gcaaagctgg ggactggtca cctgactccg caggaagtga gatcggcttg ctatcttcgt
      961 ggcttgaact ctacccacac ctctgatgac aggtgtcgaa cttggctggg agaatggctg
     1021 cacatctcct gcagcctaaa agaagctgag ctgtctctct tgctgcacaa cgtggtcctg
     1081 ctctccacca actaccttga gacaaggcgc tgagtgaacc gtgggaagga tggcattgtc
     1141 ctgcagtcgc atagtgtagc ggtgtgggac cagggagcac gtgccagctg actgtgcgca
     1201 ccactagcat gggaggctgg cagaggagca cgctacccat ccgggagcta tagacattcc
     1261 ctcactgctt gagcctaacc aacccgtgtg tgctgccgtc cccttattaa cctggaactg
     1321 gcaagcacct ctggtcacgt agtacctagg tcctacacag tcggcatttg cccaggtggg
     1381 aatcatgtgg cctcaaattc acaactgcca tgggcttttt tgtttttttg aggtgagtct
     1441 gttgccccgg ctggcctcaa attcctgagc tcaagggatc ctcccacccc aggcttcggg
     1501 gtgctggggc tacaggtcca tactgcatta gcctcactgc catgtccttt acagcagggc
     1561 agttttcctg agaccctgtg tctcatgaag ctgaggatga ccttgaagtc tggtttttcc
     1621 ttcttccacc ttgaaggggt tagaacacag gtgtggagcc ctgcaaagct ctggggtgtg
     1681 gccttggaga actgggagag tgctcctgac tttgtgagtg ctcctcacca catctttttt
     1741 tgctagagat ctctggtgcc aagaatagtg ctgcttaccc tggagtgagg acacctgtgc
     1801 ctggccctgc accaacgccc tggcagtgtt tttttcttac accctctccc tattcctttc
     1861 ttggcccttt ggagacagtc ttactatgta acccaggctg gccttcgatt cctggcaatg
     1921 ctgacagaca cttctgcctc agcctcctgg ggactgagaa tataagccac acccatcctt
     1981 tctggtgaga ccaaaattag ggatgctttt cctgtcacta gcatggacta acttccaccg
     2041 cccctttggt attctctgga cacttgtttt ttattaactt atgggaacat tctcaaggag
     2101 aaggtgagaa agaatggctg cttggtccct ccctgcattc atccccagtg tcttaatttc
     2161 caggctgtca ccaccctaag gaccttacat gtttgctacc tccactgtgt tgcagcgagc
     2221 cacctgtaac cagcagtggc tgcctttatt taggctgtgg gtcagaacgc acaggtacta
     2281 attactgccc agcccgggag accagattgc attgagatag tgagttgggc ttaactgttg
     2341 tgtgtacatc tatgtcctgt agttctgtaa taacttgctg taaatgcatg aagcactatc
     2401 tttaaaccca agtaaagact gcctgaaacc aaaaaaaaaa aaaaaaaa
//
