LOCUS       XM_039094652            3857 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine zipper and EF-hand containing
            transmembrane protein 2 (Letm2), transcript variant X7, mRNA.
ACCESSION   XM_039094652
VERSION     XM_039094652.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3857
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3857
                     /gene="Letm2"
                     /gene_synonym="LETM2S"
                     /note="leucine zipper and EF-hand containing transmembrane
                     protein 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 11 ESTs, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361169"
                     /db_xref="RGD:1311220"
     CDS             1284..2888
                     /gene="Letm2"
                     /gene_synonym="LETM2S"
                     /codon_start=1
                     /product="LETM1 domain-containing protein LETM2,
                     mitochondrial isoform X1"
                     /protein_id="XP_038950580.1"
                     /db_xref="GeneID:361169"
                     /db_xref="RGD:1311220"
                     /translation="MAFYSYNSFLAIFWTRLPGHSVHPPCSHFPPLAFFHLPDSHLRT
                     AYMKNCGSRKYSYPGLTGNNKVHPLRTRLPQKLHTTCWLQNHPGKPQPEQIPEEPKAT
                     DPQPTKDDQTEVAEGKWSLRQKIIDEVKYYYNGFSLLWIDTKVAARIVWRLLHGQVLT
                     RRERRRLLRTCADVFRLVPFVVFIIVPFMEFLIPVFLKLFPDMLPSTFESESKKEEKQ
                     KKMMGAKLEIAKFLQETMTEMAKRNRAKLDDDSSDSSQLSSYVKQVQTGHKPSTKEIV
                     RFSKLFEDQLALEHLRRPQLVALCKLLELQAFGTNNLLRFQLLMTLRSIKADDEVIAK
                     EGVKALSVSELQAACRARGMRSLGLTEEQLRQQLTEWLDLHLKENVPPSLLLLSRTFY
                     LIDVKPKPIELPPSIETPKTNLGIPSSPPPESKEDITDPAPQLNGTKDEEFIQLPPVP
                     PPLITPSATISKEAVSNPQRNLSPQVSGRALRLRNQAHRKHYGSCWHPNRKDSSNLVT
                     AAFSPQLSKSRGEKPAPWWSNLSMEV"
ORIGIN      
        1 ttaactttgc aaagctggct tagtttcctt ccctgggatc tggtctcctt aaactcgcaa
       61 tgtctatctt atttaacatg tacattagaa tatatttttg aatgttgaga tttctacaca
      121 actaatgata agcgacaacg tgaaacaaat tttttaaaga gaaaatcaaa ttctgtatga
      181 agatttcaga agcattccac ccttagaccc cgcaaaagaa aggtgttttc tttctcaatg
      241 ctgccccttc tgtcaccagg accccacaac ctcctccgtc aacccgagac ctctaggtag
      301 tttgaagggt gaggaacgga aacatcaaag cgatgtcatt agtgactcca agatgggtta
      361 caaaggcgac tatcagacct tactctggta gagccttcat tcaagtagtt ctcggggagt
      421 tagccagact acagaatgtg ggcaggcagg gggaaaaagc agctttggtc cgataataca
      481 gacgctgcta aactaacttc aacccagaag tgacttcgcg ggctcgtgca gggaacctgc
      541 cgccttccgc gccgctaccg tgaaggacac gagcccttcc caggatttga gagctcattg
      601 gatggtagtg gcgtcactcg gagtgacgtc acagggcgag gcgcaggagg tggaaccatg
      661 gagactgggc ttccggcctc tctaacgtgg gggcggggag gcattgggaa ggtagggttt
      721 ggggccttag tcatctcgta gtgatcacgg gctccctcgg cgtctcctgt cagccccaga
      781 cctcacccct aaactttgga cattttcccc tacggtgtac ctaaccccac tccaacaatc
      841 cccagaccca ccacagtcct tcccccattc cgcggaagcc accggccgag agccgagggc
      901 tccttttgca ctggtgcggc gagcgcgggg tgcagagata aagatgtctt tctcctttta
      961 accgtcgcag cagattatta gacactgttg accagaaata ataaaagcct ttggaggcca
     1021 tatcgtcttc acaatcatct tcttagaacc catttctgtg tgttgggatc attttcaaat
     1081 ccagagctaa gaaaatactg tgactgttgg aaatgaactt gaaggaaatt ttacaccttg
     1141 aatatgcaaa tttctaccct tgcattagtt tttttttaaa aaacgcccga attctggtat
     1201 ttgatgcctt tttaaaatac taaattgtct acttcttttg cctaggtctc tgtgttggtt
     1261 ggttgaaaca aacaaaaaaa aaaatggcct tctacagtta taattcattc ttagctattt
     1321 tctggacaag attgcctggc cattccgtgc accctccctg ctctcacttc cctccacttg
     1381 catttttcca cttgccagat tctcatttgc gtacagccta tatgaaaaac tgtggaagca
     1441 ggaagtactc ctaccctggg ctcacaggca acaataaagt ccatccctta cgaaccagac
     1501 tcccccaaaa actgcacacg acttgctggc tacaaaatca ccctggtaaa cctcagccgg
     1561 agcaaatccc ggaagagcca aaggcgacag accctcagcc taccaaagat gaccagaccg
     1621 aggttgcaga aggaaagtgg tccttgagac agaaaatcat agatgaagtt aaatactatt
     1681 acaatggatt cagtttactt tggattgaca ccaaagtcgc tgccagaata gtttggaggc
     1741 tgctgcacgg acaggtgcta accagacgag agaggcgaag gctgttgaga acgtgcgctg
     1801 atgtcttccg cttggtccca ttcgtggtgt tcataattgt accttttatg gaattcttga
     1861 taccagtgtt tctgaagctc ttcccagaca tgttgccatc aacttttgaa agtgaatcca
     1921 aaaaggaaga aaaacagaaa aagatgatgg gtgccaaatt ggaaatagca aaattccttc
     1981 aagagacgat gacagagatg gcgaagagga accgagccaa gttggacgac gactcctccg
     2041 attcctcaca gctctcctct tatgtaaaac aggtccaaac aggtcacaag ccctccacta
     2101 aggagatagt tcgcttctcc aaactcttcg aggatcagtt agccctggaa cacttacgtc
     2161 gaccccagct agtcgccctg tgtaagctgc tggagttgca ggccttcggc acaaacaatt
     2221 tgctccgctt ccagctcctg atgaccctga ggtctataaa agcagatgat gaagtcattg
     2281 ccaaagaagg ggtgaaggct ttaagtgtgt cagaacttca ggctgcgtgt cgggcccggg
     2341 ggatgaggtc gctgggcctc actgaagaac aactgcgcca gcagctcaca gagtggctgg
     2401 acctccactt gaaggagaac gtcccccctt ctctcttgct cctgtcccgc accttctacc
     2461 tgatagacgt gaagccaaag cctattgaac tcccacccag tatagagact ccaaagacaa
     2521 accttgggat accgtcatct ccgccccccg agtcaaagga ggacattacg gaccctgcac
     2581 ctcagctaaa tggaacgaag gatgaagaat ttatacagct gcccccagta ccaccacccc
     2641 tcataacacc atcagcaact atttccaaag aagcagtaag taatccacag agaaacctct
     2701 ctccccaggt atctggaagg gcgctgaggc tgcggaatca ggcccaccgc aaacactacg
     2761 gttcttgctg gcatccaaac aggaaggact ctagcaatct cgtaactgct gccttttccc
     2821 ctcaactatc caaaagtaga ggggagaagc cagccccctg gtggagcaac ctgagcatgg
     2881 aagtctagga gctaattaca ctataggcag agccttggtt tttatgtgct gaatgcaaat
     2941 ggttcccaca tgttatgtag tctacacagg tttctgatgt caggaaatac aagcagggaa
     3001 acaattaaag ttttagaaaa atacatgtaa ataggaaatt tctgtgccca cttctcccat
     3061 ttgggccaag taatttgggg gaggccagaa agcatgacag gcaaacagga ggaaggtcac
     3121 ccagtggagg gagtgggtgg ttgggggaga tggactgcat gtgacaggtc cactgcggat
     3181 ggatagtggg tgagcctatg gctgggtcgg cattcagaga ggcccgtgcc tgtgtcttca
     3241 ccttcatcac caaagcagtc acacaaatct gattttgtgg ccgctgctgt ctggttgctt
     3301 ttctttgtgg aggggtgagg gtggaggacg ttcactctga atgtagttca ggccttcctg
     3361 gatctcaggc cggctctgcg acctcaccag cctccggaca gggattacag tcaggtgggg
     3421 atcacaggct tgacacccgt tgagcctggc ttgtggccat taatttagaa ggtcaaagtg
     3481 gatgcctgca gaacttaagc tgcttgtgac cagagcctaa agtcctgttt tatacccaga
     3541 tcctccaggc caagtctcag gagacctcac agaacagcaa ggctaattca aaaggagcct
     3601 aaagatacct tgaagatggg cctcactctc tccaatcact gccagtcagc agtggcgtcc
     3661 atgaaggagt tctagcggag actgtctggc ttgagataaa ggatcagcca ttaagtcgtt
     3721 ggaggcctcg tgaccattcg tgatccgagc agtgacacca agttcaggcc acttagagaa
     3781 gcttaattac agcctatctc tactgtataa tttcgtcatc ttactaaacg ttgcataaag
     3841 ccactcccac catgttg
//
