LOCUS       NM_001115029            2542 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus leucine, glutamate and lysine rich 1 (Lekr1),
            mRNA.
ACCESSION   NM_001115029 XM_001064656 XM_342255
VERSION     NM_001115029.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158627.1,
            CA339992.1 and JAXUCZ010000002.1.
            
            On Oct 31, 2009 this sequence version replaced NM_001115029.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.12403.1,
                                           SRR26360181.2640322.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-788               BC158627.1         1-788
            789-1398            CA339992.1         60-669
            1399-1575           JAXUCZ010000002.1  152312507-152312683
            1576-1669           JAXUCZ010000002.1  152330583-152330676
            1670-1834           JAXUCZ010000002.1  152345339-152345503
            1835-2134           JAXUCZ010000002.1  152348573-152348872
            2135-2542           JAXUCZ010000002.1  152369134-152369541
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q31"
     gene            1..2542
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /note="leucine, glutamate and lysine rich 1"
                     /db_xref="GeneID:361953"
                     /db_xref="RGD:1565425"
     exon            1..424
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            425..514
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     CDS             467..2542
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /note="leucine-, glutamate- and lysine-rich protein 1"
                     /codon_start=1
                     /product="protein LEKR1"
                     /protein_id="NP_001108501.2"
                     /db_xref="GeneID:361953"
                     /db_xref="RGD:1565425"
                     /translation="MDRHIPMHALPKEIQQMSPEETVCKYCGVSYLILHEFKAMEEKL
                     KAVQEELKFYQGSIEREKRLQEKLQSLSQEFEKYKTDSESKKERVQHASMQLKKQQNE
                     FQRVQKELSHLQLELKIKQKQSQVFSQRLSEYKYFWNKTLLLLTFTKRELTSIKYEIN
                     DNFQNWTSLKGEVFLQIKSISDTALAEIDMLNKSLTVSQRNKVSLEEEMKCLKVLSDA
                     AILRSQQMEASKQHEVNLQARCYELQKEALDLQCQVEALGLRLQKTVKELDNCKEMLM
                     KKSNDANNCERELRKLKFESIISESRHKRLLKEKEDSLITCQQLYKTVQEELTTKGRQ
                     EEDIKRRINLAENELEMTKTLLLQTQEEILTLKNERELMLVSHQKSIEQLQETLRQKL
                     LSDDSWREKIEAELSKERARHRIEFQDQALLFKEEAKLELDIEKEKHQEIIRKYQKEQ
                     EGLQSKIADLIADATKDLRLEVASLQEKLHESHARYTEESESKKKEIEDLKNLVAELE
                     CRLKEETGHDDSVSKELKKEMKQKSDELERVRLAQTQLLQQFSQSQEENTFLQETVRR
                     ECEERFELTEALSQAKEQLLELKRSGGSLRCSLNKGALTHPVSAVSNHRELSNVRHNC
                     GRGTSSASLRGLPKPTATPTPDKLKKVDSSGLPALSQAYPPRGRAISVTEARQRLTAI
                     IRRRLSQQR"
     exon            515..729
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            730..849
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            850..1025
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1211
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            1212..1293
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1371
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            1372..1575
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            1576..1669
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            1670..1834
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            1835..2134
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
     exon            2135..2542
                     /gene="Lekr1"
                     /gene_synonym="RGD1562738; RGD1565425"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgttttacac ccagcggagt cccgggctag gtgagggtca tggcctttct cagttctcag
       61 aggaccaggc cggcagggac tttgttccgg ggctaaggcc agccgcgcgg gacggcgggg
      121 cagcgggggc ggggaggagg aaggcagggc ggcctctcgg tgcctcgggc gaggcctggg
      181 ccggcgcggt cgagtcgggc agttagtttc ctgcagtcgc ggggcgtgac ctcccgctct
      241 cctgcccctg acctgccctc ttgtgaatca cggcccggga atggtactag aggaagggcc
      301 tggaagcaga accggagtta atgaccgggc gtgacaccgg tgtaagagtc ggaaatgaac
      361 caccaaggac gtttcggcat ttaagaacac acacgtctat ctcgtgacca gtgtcacaga
      421 gaagcctgtt tttctgcagt gctctctcag tgcgattaga ggagtcatgg atcgtcacat
      481 tcccatgcac gccttaccca aagaaatcca acagatgtct cctgaagaaa cagtttgtaa
      541 atactgtggc gtcagctacc taattctaca tgaatttaag gctatggaag aaaaactgaa
      601 agcggtgcaa gaagaattga aattttatca aggaagtata gaacgagaaa agagacttca
      661 agaaaagctg cagtctctta gccaggagtt tgaaaagtat aaaactgaca gcgaatccaa
      721 gaaggaaaga gttcaacatg caagcatgca gttaaaaaag caacaaaatg aatttcagag
      781 agtacagaaa gaattaagtc atctacaact tgagttaaaa attaaacaaa aacaatctca
      841 agtcttcagt caaagattgt cagaatacaa atacttctgg aataagactc ttttattact
      901 tacttttact aaaagggaac taacaagtat taaatatgaa ataaatgata attttcaaaa
      961 ctggacttca ctgaaaggag aagtgtttct acaaattaaa tctataagtg atacagcctt
     1021 ggcagagata gatatgttaa ataagagtct gacagtgtct cagagaaata aggtaagcct
     1081 ggaagaggaa atgaaatgtc tcaaagtgtt gtcggatgca gccatattga ggtctcagca
     1141 gatggaggcg tccaagcagc atgaagtgaa cctgcaagcc aggtgctacg agctgcagaa
     1201 ggaggcactg gatttacagt gtcaagtaga ggcccttggg ctgagacttc agaagacagt
     1261 gaaggagctg gacaactgta aagagatgct catgaaaaaa tctaatgatg ctaataactg
     1321 tgaaagagaa cttagaaaac tgaagtttga gtccattatc tctgagtcaa ggcacaaaag
     1381 gctacttaaa gaaaaagaag actctttaat tacttgtcaa caactatata aaaccgtaca
     1441 ggaagagctg actacaaaag ggagacaaga ggaagatata aagcgaagaa tcaaccttgc
     1501 cgaaaatgaa ctagagatga ccaaaacgct cctgcttcag acacaggaag aaattttaac
     1561 gctgaaaaat gaaagggaat tgatgctggt ttctcatcag aaaagcatcg agcagctgca
     1621 ggaaaccctg agacagaagc tgctgagcga tgacagctgg agggagaaga ttgaagctga
     1681 gctcagcaag gaaagagccc ggcatcgcat tgagttccag gaccaagctc ttctctttaa
     1741 ggaggaagct aaactggaac ttgacattga aaaagaaaag caccaggaaa taatccggaa
     1801 gtatcagaaa gaacaagagg gcctgcagag caagatagct gacctaatcg cagatgctac
     1861 aaaagacctg aggctggaag tggcctctct ccaagaaaaa ctccatgagt cccatgcgcg
     1921 gtacacagaa gagtctgagt caaagaaaaa agaaattgaa gacctgaaaa atctggttgc
     1981 agaattggag tgtcgtttga aggaggaaac tggccatgat gattcagttt ccaaagagtt
     2041 gaagaaggaa atgaaacaga agtcagatga gctggaaaga gtaaggctgg cccagacaca
     2101 gctgctgcag cagttcagcc agtcacagga agagaacact tttctccagg aaacagtgcg
     2161 cagagagtgt gaagaacgct ttgaactgac agaggctttg agtcaagcca aagaacagct
     2221 cctggagctt aagaggagcg gaggaagctt acggtgttcc ctcaataagg gtgccctaac
     2281 ccaccctgtc tcggcagtca gtaatcaccg cgagctaagc aatgtgagac acaactgtgg
     2341 acgaggcacc agctcggcca gcctgcgcgg actgccaaaa cccaccgcaa ccccaacccc
     2401 agataaactc aagaaggtcg acagctccgg actgcctgcc ctttcccagg catatcctcc
     2461 caggggccga gcaatttcag taaccgaggc caggcagagg ttgacagcca tcattcgcag
     2521 gaggctgagt cagcagcgat ga
//
