LOCUS       NM_001271365            2089 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus low density lipoprotein receptor class A domain
            containing 4 (Ldlrad4), mRNA.
ACCESSION   NM_001271365 XM_003753060
VERSION     NM_001271365.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2089)
  AUTHORS   Nakano,N., Maeyama,K., Sakata,N., Itoh,F., Akatsu,R., Nakata,M.,
            Katsu,Y., Ikeno,S., Togawa,Y., Vo Nguyen,T.T., Watanabe,Y., Kato,M.
            and Itoh,S.
  TITLE     C18 ORF1, a novel negative regulator of transforming growth
            factor-beta signaling
  JOURNAL   J Biol Chem 289 (18), 12680-12692 (2014)
   PUBMED   24627487
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Sep 18, 2012 this sequence version replaced XM_003753060.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1985178.1,
                                           SRR26360190.296896.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-190               JAXUCZ010000018.1  63916552-63916741
            191-331             JAXUCZ010000018.1  63953988-63954128
            332-486             JAXUCZ010000018.1  64087084-64087238
            487-540             JAXUCZ010000018.1  64104610-64104663
            541-2089            JAXUCZ010000018.1  64111517-64113065
FEATURES             Location/Qualifiers
     source          1..2089
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.1"
     gene            1..2089
                     /gene="Ldlrad4"
                     /note="low density lipoprotein receptor class A domain
                     containing 4"
                     /db_xref="GeneID:679578"
                     /db_xref="RGD:1587105"
     exon            1..190
                     /gene="Ldlrad4"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..1071
                     /gene="Ldlrad4"
                     /codon_start=1
                     /product="low-density lipoprotein receptor class A
                     domain-containing protein 4"
                     /protein_id="NP_001258294.1"
                     /db_xref="GeneID:679578"
                     /db_xref="RGD:1587105"
                     /translation="MPEAGFQATNAFTECKFTCTSGKCLYLGSLVCNQQNDCGDNSDE
                     ENCLLVTEHPPPGIFNSELEFAQVLIIVVVVTVMVVVVVCLLNHYKVSTRSFINRPNQ
                     SQRQEDGLQPEGSLWPSDSSVQRPGASEIMCAPRGRDRFTTPSFIQRDPFSRFQPTYP
                     YVQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQMELNRESVRAPPNRTIFDSDL
                     IDISMYNGGPCPPSSHSGISAATCSSNGRMEGPPPTYSEVMGHYPGTSFFHHQHSNAH
                     RGSRQQFQPNNSEGTIVPIKGKDRKPGDLV"
     exon            191..331
                     /gene="Ldlrad4"
                     /inference="alignment:Splign:2.1.0"
     exon            332..486
                     /gene="Ldlrad4"
                     /inference="alignment:Splign:2.1.0"
     exon            487..540
                     /gene="Ldlrad4"
                     /inference="alignment:Splign:2.1.0"
     exon            541..2089
                     /gene="Ldlrad4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccagtgggca tcggatgctc ccaaaagctg gaccagcaga gcgatggact tggtcaggct
       61 aaaatggaag tgacctgagg cctcgcccag gcggtttctt cacaacagga cagcttaaga
      121 attgaaacac aggctcgtct ggggagcagt atgccggaag ctggttttca ggccacaaac
      181 gcgttcacag agtgcaaatt cacctgcacc agcggtaaat gcttgtatct tggttctctg
      241 gtctgtaacc aacagaacga ctgtggggac aacagtgacg aagagaactg tctcctggtg
      301 actgaacatc caccgccagg catcttcaac tcggaactgg agttcgcgca ggtcctcatc
      361 attgtcgtgg tggtgacggt gatggtggtg gtcgtcgtct gcctactgaa ccactacaaa
      421 gtctccacac gttccttcat caaccgcccc aaccagagcc agagacagga ggacgggctg
      481 cagccggaag ggtccctgtg gccttctgac agctccgtgc agcggccagg ggcttcagag
      541 atcatgtgtg ccccacgggg cagggatagg tttacgaccc catctttcat ccagcgggat
      601 ccgttcagtc gtttccagcc cacctacccc tacgtgcagc atgagattga cttgcctccc
      661 accatctccc tgtcagacgg ggaggagcca cctccttacc aaggaccctg cactttacag
      721 ctccgggacc cagagcagca aatggaactg aaccgagagt ccgtgagggc cccgcccaac
      781 cgaaccattt ttgacagtga cttgatagac atttctatgt acaacggggg accatgccca
      841 ccaagcagcc actcgggcat cagtgcagct acctgtagca gtaacggaag aatggagggg
      901 ccgcccccga cttacagcga ggtgatgggc cactacccag gcacctcatt cttccatcac
      961 cagcacagca acgcacacag gggcagcaga caacagtttc agccgaacaa ctcagagggc
     1021 acaatagtac ccatcaaggg caaagacagg aagcctgggg acctggtctg attccctcca
     1081 gagtgcactt ttcaaggaga gaaaaacctc ggcagggaga gagagagaga gagagagaga
     1141 gagagaggcc cgctggcccc actgccacag tgttgtccag ctttacgtgg tacagctgag
     1201 taaaaccaaa atgtgcaaac acggtcttcg tttctgattc ctttcacggg aattgcatgc
     1261 aaacaagact gaaacacaat acaaacttcc atccggtttg accacaaaca gtgttcatct
     1321 tggggcaggg gtggagacag ggttagagat ggtatgagct ccacaaaggg gtgtgcagag
     1381 aaaacccaaa aggctgcttt gaagacatca tgaaagtaag acccacagag gtatttttga
     1441 catatttaat tccaaaagga gacttcggat aaatgaggcc acaatggcct gttttataat
     1501 taactgaata aagaaggaag aattattata tattatcatg gggaagaatc agccagtttg
     1561 ctttttctcc aaaggtgtga aacttatttt tttttaaaaa tatgagtcaa aactcctgtt
     1621 ttgtgtgcca aggtttaaag ttggagaagt tagatgagtg agagggaagt aatttgtgtt
     1681 gtgatggtat gttttaagag ttgcactatc tcaatgttta aaaatatgga tgagggaacc
     1741 atgttgtgtg aagttctata tgttgtcttg tcacctatgg atggctatca tgcccaagga
     1801 gcactcttga gtgtccacag agtcatacaa gaaaggtatc tggggatgta cccctggtgt
     1861 tcgccaagtt aatgtggtta tgtcgcaaga atttgcagcc agaagcagtg tactactgag
     1921 gtatttggag aggctggtga aaagaaacac ttgcattgtg tgctgagtgt catacagagc
     1981 tagtcttatt cccagcggga tcagcagtgt agactttctt ttttcacggt agcatgacat
     2041 accttcagac acatacccta ttttatgcaa taaattgtct aaaatgcga
//
