LOCUS       NM_001401870            3922 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus low density lipoprotein receptor class A domain
            containing 3 (Ldlrad3), mRNA.
ACCESSION   NM_001401870 XM_345406
VERSION     NM_001401870.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3922)
  AUTHORS   Ranganathan,S., Noyes,N.C., Migliorini,M., Winkles,J.A.,
            Battey,F.D., Hyman,B.T., Smith,E., Yepes,M., Mikhailenko,I. and
            Strickland,D.K.
  TITLE     LRAD3, a novel low-density lipoprotein receptor family member that
            modulates amyloid precursor protein trafficking
  JOURNAL   J Neurosci 31 (30), 10836-10846 (2011)
   PUBMED   21795536
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Feb 28, 2022 this sequence version replaced XM_345406.9.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.12183.1,
                                           SRR26643290.12419.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               JAXUCZ010000003.1  108936152-108936330 c
            180-326             JAXUCZ010000003.1  108865555-108865701 c
            327-452             JAXUCZ010000003.1  108823811-108823936 c
            453-587             JAXUCZ010000003.1  108811720-108811854 c
            588-933             JAXUCZ010000003.1  108699247-108699592 c
            934-3922            JAXUCZ010000003.1  108694528-108697516 c
FEATURES             Location/Qualifiers
     source          1..3922
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q31-q32"
     gene            1..3922
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /note="low density lipoprotein receptor class A domain
                     containing 3"
                     /db_xref="GeneID:366138"
                     /db_xref="RGD:1307846"
     exon            1..179
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..1171
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /note="low-density lipoprotein receptor class A
                     domain-containing protein 3; low-density lipoprotein
                     receptor class A domain-containing protein 3-like"
                     /codon_start=1
                     /product="low-density lipoprotein receptor class A
                     domain-containing protein 3 precursor"
                     /protein_id="NP_001388799.1"
                     /db_xref="GeneID:366138"
                     /db_xref="RGD:1307846"
                     /translation="MWLLGPLCLLLSSTAESQLLPGNNFTNECNIPGNFMCSNGRCIP
                     GAWQCDGLPDCFDKSDEKECPKAKSKCGPTFFPCASGIHCIIGRFRCNGFEDCPDGSD
                     EENCTANPLLCSTARYHCRNGLCIDKSFICDGQNNCQDNSDEESCESSLEPGSGQVFV
                     TSENQLVYYPSITYAIIGSSVIFVLVVALLALVLHHQRKRNNLMTLPVHRLQHPVLLS
                     RLVVLDHPHHCNVTYNVNNGVQYVATQAEQNASEVGSPPSYSEALLDQRPAWYDLPPP
                     PYSSDTESLNQADLPPYRSRSGSAYSASSQAASSLLSVEGSSHSPEQPGPAESTSEPR
                     DSVPSQGTEEV"
     exon            180..326
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /inference="alignment:Splign:2.1.0"
     exon            327..452
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /inference="alignment:Splign:2.1.0"
     exon            453..587
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /inference="alignment:Splign:2.1.0"
     exon            588..933
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /inference="alignment:Splign:2.1.0"
     exon            934..3922
                     /gene="Ldlrad3"
                     /gene_synonym="RGD1307846"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctgagctc tttggcctgg gagggcgggg gcgtggctgg gccggcgaga gggcgtggcc
       61 ggcgccgaga ggcggggtct gaccgaggcc gcggggcagc aacgtcgctg ggcagcggag
      121 cagcagccgc gccatgtggc tgctggggcc gctgtgcctg ctgctgagca gcaccgcgga
      181 gagtcagctg ctccctggga acaacttcac caatgagtgc aacatcccag gtaacttcat
      241 gtgcagcaac gggcggtgca tcccaggcgc ctggcagtgt gatgggctgc ctgactgctt
      301 cgacaagagt gacgagaagg aatgccccaa agcaaaatcg aaatgtggcc cgaccttctt
      361 cccctgtgcc agcggcatcc actgcatcat cggccgcttc cgctgcaatg gctttgagga
      421 ctgcccggat ggcagcgatg aggagaactg cacagcgaac cccctgctct gctccacggc
      481 ccgctaccac tgcaggaatg gcctgtgcat tgacaagagc ttcatctgcg acgggcagaa
      541 caactgtcag gacaacagtg acgaggagag ctgcgagagt tctctagaac caggcagtgg
      601 gcaggtgttt gtgacctcgg agaaccagct cgtgtactac cccagtatca catacgccat
      661 catcggcagc tctgtcatct tcgtgctggt ggtagccctg ctggcactgg tcctacatca
      721 tcagcgcaaa cggaacaacc tcatgactct ccctgtgcac cggctgcagc atcctgtact
      781 gctctctcgt ctggtggtcc tggaccaccc ccaccactgc aacgtcacct acaatgtcaa
      841 taatggtgtt cagtatgtgg ctacccaggc cgaacaaaac gcctcagaag taggctctcc
      901 accttcctat tcagaggccc tgctggacca aagacctgcg tggtatgacc ttcctccacc
      961 accttattcg tcggacaccg agtctctgaa ccaagctgac ctgcctcctt accgctcgag
     1021 gtcaggaagt gcctacagtg ctagctccca ggcagccagc agcctcctga gtgtggaagg
     1081 cagcagccac agcccagagc agcctggccc tgcagagagt acctctgagc ccagagactc
     1141 cgtgcccagt cagggcactg aagaagtata aaatccagtg attccaaagt ccatatgggt
     1201 agatcctctc cagctctttg aattctaaca aactgtgctc atgggacact ctttgagctc
     1261 cttttgagga tgtctctagt tgaagttttg gggtgctgac tgcatcctct cctccaggta
     1321 tcagggatgt tcttcggaat gacccggcac ttttccgccc acctagttaa gaggatgcac
     1381 tgccgtcttc tctgcgcagt tgctgttcct tgggggcctg tgatttacag actcgtgctt
     1441 cagatgactg tgcaactgtt ggtccatccc agcagtctcg tgcctgggca ggcagcaggg
     1501 tgaagccatg tgtaaatagt ctttggccgg gttctagggc caggttgcac agtcaggagg
     1561 tcagaggagg tcagaccaga gtccacgggg ctgcctgcca ccttatagat acatttggag
     1621 acctagcttg gaggattgtt ataaaaggcc attgttcagt ggccactcca aaacgtgtcc
     1681 aggagaacat cagatcccac cttgtactcc cctgtgcatc gaccgaactt cagcagaggc
     1741 caaagaaaga ttctgacatg agcaacggct ttcaactctc aaaactctag tttggtttta
     1801 tgagagactt agaaacctcc aacctggcct tacaaactcg cctaagattc ctcattttga
     1861 aagctttcta gatgcgcaga tcccagcagc atccttgaat gagtaggaac cctctgccat
     1921 gagttcttag ctcctaatgg gtcggttacc agagtctggt cctgcctcag ccccataatc
     1981 ctttccctga cttctggaat gtcccctccc aaggtgacct gccatagata agggtaagga
     2041 cccacatgaa gttggtcaaa attcggatct aaccctttgc cccaggaaaa tgggcccagc
     2101 ctgttcatct acgcaacttc ctcactaggc tcctaagttc cgtgaacacc taagagcctg
     2161 ttttccatgt gcatttggac acgggacatg agtttttttc taacttacat gaaaaccaca
     2221 ttcagtacca cccatgggac cactctcagg tccctgtact gcacaacccc caggaacggt
     2281 gcaccaagtc agggttaggg ttagagtgag ggtcaggcct gaccagacac cctggcagtt
     2341 tctcttgaga gaagtgggca atagataact tggagtcaag atttcccatt ggattttttt
     2401 taaagtctct tagaaatgca tttgaaacag tgtgtttgtt ttttcccttc tagttaaggg
     2461 actatttata tgtgtatagg aaagctattt ctctggtttt cttctttctc ttttagtgag
     2521 gtccaaagaa agatgcaaaa agaaacgctg cctttcccca gccccatccc attatgtcac
     2581 ctcagactca catacatgcc aagcatctat ctacactgga gcatctcgga gtcgttattt
     2641 attgagttac tgaaacatgc agagacaagt cctccatcca ttttctgtat gtttggatta
     2701 cctttcctcc ttcttcatgc ccagccagcc ctagtgcatg ccaccaccac gcacccctgc
     2761 caaccaggca ataatgggta aaccatacta actagggaca aaactgggac cagatggtgc
     2821 cacctcaggc agctgccacc cattcaaagc atttttccac agctgacgaa agtttcaaca
     2881 actcgttcga tgctaattaa aagggagcct gcagggagcg gggatgaagt ggccttcaat
     2941 gatgctgtac tgacttcctt ttaaaccaaa acaaactaga ctgaaggaga gatagctagc
     3001 cactggggtt tggtttggtt ttggttttgt gtaaataagc ctaggtgttt gtttctttcg
     3061 ttttttaaaa tagaaattga gttgttgttg gtaatggtgt gtgtgtgtgt gtgtgtgtgt
     3121 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt ttgtcccaat gaagaaagac cctggatggc
     3181 agacagcgct tttctggctg cacattttat cccagtgagt cagcatggct cttcccttcc
     3241 tttgatgggt ccctgcttct ttttggtgct ctgaaagttg tctggcggaa aggattctaa
     3301 ttttaattaa ttgtgcagtg agctaatctc ctgagctttt ctgcttcgag gcattttagg
     3361 aaaaacaaat ggttttagta gataaggaga gcctattaat gttgggtttt ttgttttgtt
     3421 ttgtttccaa acaaacacag gaacattttt tactatagat ttggttttta atggattttt
     3481 tttaaataat aatataataa ataagagagc caagctctgg gaattggggt tttttcccct
     3541 gattttctca agatatcgag tgagttgcta gcaatatttt tttaaattca ttccagtcag
     3601 ggttttttta aatactatat tgcctaactc tacaccagcc agaaaaatgc tccttctcta
     3661 ctgttcctcc tccagtgagg tcagcacttc attttgacac tacactagat tcactgtggt
     3721 tggaaactca ctgcctcact taactccctc taccttgtaa ttgatgggtt ttttttgaaa
     3781 tgtaactaag atattaataa atagtgtgtg atattcaaag ttatataaac tggaaggttg
     3841 tatgtggtcg ctttttggtt tatttttaat taggcttttt tttaattttt atactctcaa
     3901 ataaactagc agtttcattc tt
//
