LOCUS       XM_578500               3267 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus low density lipoprotein receptor class
            A domain containing 2 (Ldlrad2), mRNA.
ACCESSION   XM_578500
VERSION     XM_578500.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_578500.8.
            
            On Jan 21, 2021 this sequence version replaced XM_578500.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3267
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3267
                     /gene="Ldlrad2"
                     /note="low density lipoprotein receptor class A domain
                     containing 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 ESTs, 1 long SRA read, 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 15 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:502992"
                     /db_xref="RGD:1564888"
     CDS             1196..2230
                     /gene="Ldlrad2"
                     /codon_start=1
                     /product="low-density lipoprotein receptor class A
                     domain-containing protein 2"
                     /protein_id="XP_578500.2"
                     /db_xref="GeneID:502992"
                     /db_xref="RGD:1564888"
                     /translation="MAFLRLLPQRLLLLGTTALTVSALGTADLTDLCGQTWQGDGLQL
                     RSHSTSRKFYFVTPDTDCTLWLRAAAPEDRMRFQFRFFLVYSLSSATRTTAATQTTVA
                     TPTAKASSRDPCAPGSYLQFYDGPQEAPRALGPPICGLTIPAPFMSSGPWLGLRLVTR
                     GRQPRVDFLGEVTSFRLGPCGIYFRCRNGRCVPWSLLCDNWNMDNCGDGSDQDSRPPA
                     SCGGPSLMPKETTTMENDSSKPLTLLVALGSAAKQTSPAGLAPVTQEVLEGPWLWWVA
                     LASSILLTCTGLLWCCCCLGWLAWHPDAHRLRLRCCAACNVCHQCPGRVAPGGLWLSW
                     PAFQNQGDHR"
ORIGIN      
        1 ttttagcaat acatccactt gttcccagag tgagcaactg ttttcacaca cagtactaat
       61 ccttgcgctt gggaggtaga ggcctaagga tcagaaattc aagttcattc ttgactgtgt
      121 catatcaagt ttgaggccag cctggattgc atcagactct atccaaaaac acatacacat
      181 gcattttaga tagggtccta ttgcctacag agaccaagac aactgttcag aaggcaaagg
      241 tttagttggg ggctggctta cagtttcaga ggttcagtcc attgtcatgg tggggagcat
      301 ggcagcaggc aggcagactt ggtgctggag gagccgagag ttttacatct tggtccttga
      361 tccacaggca gcagaagggg accatctccc acaatgggca gagcttgact gaatactagg
      421 aaacctcaga gtttcccagc ctacacagtg acatgtttct ttccacaagg ccacaccttc
      481 ctaatagtgc cgctttccat aggccaacca tattcaaacc acctccacat gaaaatcaat
      541 cacgagaaga tacattcaga gagatatgat tgagttattg gttgggagct cggtcaagtt
      601 tagaagcggt tggacaaggg caatctgaag aggttaaatg tgagtcaaga tgggataacc
      661 taacatagct agtcataggc agctatgggc ccttgaccac tgtgaatgca aagaccccgg
      721 gtccggaacc cttggttagg aactgaaaca actcccggtg tcatatgcca tcccttactg
      781 cttctttagg tcctcagaga ggttcctttg gtatcctggg cctctctcaa gctcggtctc
      841 ctcatctttc taggaaagca gcggtccatg gagagcagag gcctcccttc taggcctccc
      901 tgcagctaag ctgaatctga gtctcctgct tcctgtctgg cagaggatga gcagacatcc
      961 tggtcttctc cagcttaggg ccccaaatct ccatggtaac ccttagacgc aattctgatt
     1021 caaaggagga agacctgaga gggtgagccc agaacacagt gtggagacct gaggagcctc
     1081 tctgcccgct tgtgccctgt tcgcttcctg gagctgtcag ggcccgcgcc cctgtctccg
     1141 caaagacccc gaaggaggtt gcgcaggtct gccccctgct ggacacagat ccaggatggc
     1201 ttttcttcgg ctgctgcccc aaaggctgct cctgctgggc actactgcct tgaccgtgtc
     1261 tgccttaggg accgcggatc tgacggacct gtgcggacag acgtggcagg gggacgggct
     1321 gcagctgcgc tcgcactcga cttcgcgcaa gttctacttc gtgactccag acactgactg
     1381 cacgctgtgg ctgcgcgctg cggcccctga agacaggatg cgcttccagt ttcgcttctt
     1441 tctggtttac agcctgtcct cggccacccg gactaccgca gccacccaga ccactgtggc
     1501 cacaccaacc gccaaagcat cctcccgcga cccgtgcgca ccgggctcct acttgcaatt
     1561 ctacgacggc ccgcaggagg cgccccgggc cctgggaccc ccgatctgtg gcctgaccat
     1621 cccagcccca ttcatgtcct cagggccctg gcttggcttg cgcctggtca ccaggggccg
     1681 ccaaccccgg gtggactttt tgggcgaggt cacctctttc cgcctgggtc cttgtggcat
     1741 ctacttccgc tgtcggaatg gtagatgtgt gccctggagc ctactctgtg ataactggaa
     1801 catggacaac tgtggtgatg gcagtgacca ggactcccgt cccccagcca gctgcggagg
     1861 tccctctctg atgcccaagg agaccacgac aatggaaaat gacagttcca agcctctgac
     1921 tctcctcgtg gctcttggtt ctgcagctaa gcagacttct ccggcaggtc tggcgcctgt
     1981 cacacaagaa gtgttggaag gtccctggct ctggtgggta gctctggcct cctcgatact
     2041 gctgacctgc actggccttc tttggtgctg ctgctgcctg ggttggctgg cctggcaccc
     2101 agatgcccac aggcttcgcc tcaggtgttg tgcagcttgt aatgtttgtc accaatgccc
     2161 tggccgggtg gctcctggag gtctgtggct gagctggccg gccttccaga accagggaga
     2221 tcatcgttag ggggctgtag ttatctgggg tctgacaggc ctgggtttta agctctgtta
     2281 gctagctgac ttggaagagg tcactcagtt ctttgaacgt cagtctgcct ctctgagaaa
     2341 tgggccatgt cctgtttccc aaatgaggta aaggctgcag aaagcagaag gatcaggcaa
     2401 gcctggtcta catatcgagt tctaggacag ccatgacaac aaagagaaac cctgtcacaa
     2461 aaaaacaaaa acaaaaacaa aaaaatcccc aaccaaacca aaccaggaga gatggcaagt
     2521 gcttaagaat actggccgct cctccaagga cccagattca gctctcagca cccacatggc
     2581 agctcacaac tgtctattat tctagttcca ggggagccaa caccctagtc ttttctgggt
     2641 tcctcggtag taggtacaca atatggtggg aaaaacaaaa agaaaaatga aagaccagag
     2701 acctaaaaat acatcaggcc actgaatgcc ctggatcaga tacaaggaag gacacctaat
     2761 gcaggctaca gtggccacca gaggctggtg tcctggatgg aagggtgaca catttaggac
     2821 agatatgggg ctctcagtgc agcaggatcc cctgcttgtc ttgtttgagc tgcaaactcc
     2881 taggacccag ctctgtggtg gttggcaatg ctaactgggc cgttaaactc ttaactgcag
     2941 tggggcctct ctgcatctca gccactgcct tcactggggc ctcttcaaac cttctgtagt
     3001 cgctttgtaa tacagcacat gcctatatac ccagagatac acgaggcagc gagaagcgtc
     3061 ccgaaacgtc tgagaattac cactagtcac taggattgga aggagaggat ctgagactgc
     3121 caagggccat gtctgcgagg gaagtcgtag ccaatgatat tgacgtgact tatcaaaaca
     3181 atatcgactt agcatctatg agtgatattg atgtaggtta tgtaaattta tttgtgattc
     3241 aataaagctt gattcgtggg aaggtaa
//
