LOCUS       XM_039111135            9045 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus low density lipoprotein receptor class
            A domain containing 1 (Ldlrad1), transcript variant X1, mRNA.
ACCESSION   XM_039111135
VERSION     XM_039111135.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9045
                     /gene="Ldlrad1"
                     /note="low density lipoprotein receptor class A domain
                     containing 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 5 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:689088"
                     /db_xref="RGD:1597398"
     CDS             7117..8007
                     /gene="Ldlrad1"
                     /codon_start=1
                     /product="low-density lipoprotein receptor class A
                     domain-containing protein 1 isoform X1"
                     /protein_id="XP_038967063.1"
                     /db_xref="GeneID:689088"
                     /db_xref="RGD:1597398"
                     /translation="MESGQLCGVGVLLAPVPGTGKKVLRHLYPLNHPAGPQNVTRSTN
                     SSLSSVEWEVSLSNCNLGRHLAAPGDKAEDSTLSSPCSTTVPGDECWSHEQNLPTDAE
                     SNMTTGRKTRPGGEGCGPLCYSRRGACLSVFLLLLLAMLAALLLIVTILGHPQRTPEP
                     HSCVTLANRTGFLCHDRRYCIPAHAVCDGIRTCPHGEDEAENLCRDLPKSLPSFLLTT
                     CGNPDSWIYSDQKCDGTNNCGDCSDELSPVTACPPCGPGWWYCTPTVFRYCSCVPRVL
                     CRDGVQHCSDWSDEYSCPGP"
ORIGIN      
        1 gtgtgtgtgt gtgtggtgtg tgtggtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
       61 gtgtgtgtgc tggatgtgag gaacatttgc atgccacagc atgtgtagag agatcagttc
      121 tttcccttac cagttgagat gggtcctctc ctcatatttt tgctgctgca ctgtgtactc
      181 cagggtggct gacctgagag cttctggcat attccaggaa ctcaaatgac aaatttgggt
      241 tgttgggctt ttgaagctaa tgctttggcc cctcagccat ctctcctgaa gtcccatttg
      301 atgcagtttt tgcacagctt agatttgcaa gaatttttcc aaaggaactg tttgacctct
      361 ttaaaatcac atcaaggtat ttttagagaa aatggcattt taacattaga cattcattct
      421 cctgtgctgt agacttaggt acagatttga cttggtagaa actgacattt gttgcccttc
      481 ctttaccatc agtgatagag aattattatt gatttttagc tgtttatttc cggtatgcca
      541 gtgttttgcc tgtatgtgca cacgtgtgtg cctgctgcac acagcagtca gaagaggatc
      601 tcatccctca gaactgggtt tatagggact tgtgagctgc catgtgggag ctgggaatga
      661 acttcagtct ggtcgaccgg ccagtgctct tagtgctgag gcagctccca ccctagtact
      721 agagattgag aacaacggca gcaccagagg ccgtcttcta ctgcgtcttg atgtggttct
      781 gcatcaccac acagggaatg ttaaaccttt gctaaccacc atcgttgatc tcagagctgg
      841 gtggcgctgc agtgggagtc tcactggaag gcctcacaca ctgtggtgca gttgtcaagc
      901 ttctctaagt caagaagata cagctgacag ctaagaagca gggacactgg tcacaaaata
      961 taggctttgt ttataagata gtgtgtctag atttggaaga cagcaggccg agggccaatt
     1021 ctcaacacat gagcctttcg tgggtgtttt ccctctgagc ctgagtaagc ctggaggact
     1081 tcgagagcac ttgggagcac cactaatttc aggaggaagc agtgaccggc ttcagcctgg
     1141 agggaagttg gggggggaag ctagggaagt tgcagggaac agtgttctcg cagtggggac
     1201 agcagaccta agctgaggga cccagagctg ggactgcaga ttgttcagca gcctaagcta
     1261 ggacgtagat gtgaatatta aaaggcctcg ctaagcctcc atcctgcaca gaatggagag
     1321 tcattgcaaa gaagtgaagc cccagggtct cgttggagaa tgggtcccag aatgattctg
     1381 agacagcaat gtggaacagc ctgggaatgg gagcaaatgc agagacggcc atagcttggc
     1441 cccactgttg ggtttatact gtaggccaaa cccagggcct cactcatact aggtaagtgc
     1501 tctacagtag agctctatcc agccttggat ttctgaggca gcctctgtgt agctcagtca
     1561 agcctgcctc agctcccgag tgctgggatt acttacgggt gtgtactttg ctccatacta
     1621 gtttttatta agtggactgc ggtcctgttc tctttactca cattgtttag accttattcc
     1681 ccacagtgtt gtaagtctag gaccctgcat tgtggtcaca acccagatca gcagttctca
     1741 acctgtgggt cacagccttc tggtggtggc acatcagatg acctgcgtat ccgagattta
     1801 tatcacgatt cataacagta acaaaacgac agttaggaaa tagcaaccaa atgattttat
     1861 gattagggat ccacaacatg agaaaccata gggaagggtc gcagcatcag gctgagaacc
     1921 actgctctaa gtgaggccaa acaaaagact gagccaagat ccaaccatga actgcttcct
     1981 gttggactga gtcttcaagc tacattgtca cacaaccagt cggcttaacc actgtctaag
     2041 gttgcacatt ctcagagcag gctccctcag ctgccctgga gccctccccc aggcttcaag
     2101 ttgctaagct tcccgtttga gtaccctcag ctcctttccc tttaatcttt ccttaactat
     2161 ttgttctaca ttagtctggg tttaaggtgt ggcctgcaat aaaggctgag gcactggaga
     2221 ctgcattgtg ttctgtggag agctgacttc tgaggcacag cccctaccgt acttgaaatt
     2281 cctaattatg aaaaccattt tcatatttca ctgctaagtg cccttcctat gctgtgagta
     2341 actgtcctgt ttagaacagg gatgttcttt ttgggagagc atgtgtgtgt atgcatgtac
     2401 ccccagtgta tccatgtgtg gaggtcagag gtcagcatca gtctcctcct atgttgctgt
     2461 ccaccttatt tttaagactg aatctctcac tgaacatgga gtacaagaat ttggctaaac
     2521 tggctggcca agcccctgaa gtcctttttg cctccccact gctggaatta caggcctgca
     2581 gccctacttc ccctactttt tatttagatg ctggggatcc aaacctagat cctcatgcag
     2641 attacctact gagctatctc cccagacccc taggaccggg attcttacct tctgcaccac
     2701 agagcttttg gagatcttat ggagtccttg gacccctctc agaattatga tttcatatgt
     2761 agaacactaa atatgaagga ttataaggaa actaacatag tgctaatcaa agtgttttca
     2821 gaactttgat gtagttatat atgtgtatat atatatatat atatatatat atatatatat
     2881 atatatatac attcacccag aacatcaaag ggtagttgta acacttcttt gatctcagta
     2941 tttttttatt actattaatt aacatctact gcagtgtgga ctctgctggt gatgatgtca
     3001 caggcctgct atactccagt tcaaatctag tgaacacttg aattagcttt ttccccaacc
     3061 aagttcacct aatccccgcc cgagggtggt ctgagtttga cgtattagga ggaagttgtt
     3121 ttagtttgct tgctgggttc aggttatcga ccgacccgac tcactgcatc tgcgtgagct
     3181 ttctacacct gaactgtttg cagtgttagc cgcaattgag ggcttgggta gaaaggagtc
     3241 aggaactgat tggaaaagaa ggatttcatc agaagctcgt ggtagtgatg ctttccctgg
     3301 ggcaacatgc ctcttaagtt cataatgttc aactgcatgg actctaataa aatttgcaac
     3361 atctgaatga agcaagtacc taattagata attcacaata ggctttgctt ttagaagact
     3421 tgtatctcac aggatcttgt cttcagtctt ctttctcagc ttagctattt tggtggctga
     3481 agaatccttc taacacccct gcaaggagag cagatggacc agaccctctc catcttgaca
     3541 gtacagtctg ggaggtaggt tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     3601 tgtgtgtgtg tgtgtgaagt gctgtaattc tagggctgtg gaaagtacct ggggggggca
     3661 ataaatgctg agatgggggt caggccattc ttctagacag ttcgatgctc tggggcccct
     3721 gtaattgggg tacccattta gttagatgct tctaacgctg tgcctagctc tcaagaacat
     3781 ctctctgcct ggagacagac ttattccatt ctgcccccat tgttttgatg agacaactga
     3841 ggctaagatt ggtgctgcct tcttagatag taacttgata gtgaaaagga aaactggggc
     3901 tgtctgactc aaggcaggtg tcctatgtcc agtgggtctc tcctggcttc agcaaattaa
     3961 gatgtggcca gaagctaaag aaggaaaggc aagggaggta tgatacccaa ggctccctgg
     4021 aaggaggcag actcagaaag gtagaggaaa cctacagaac tcctcaagca gataaccaag
     4081 cacaagccag ccagcccata tggcaggctg ctgagatgag cgttggtggt tcgtacctgt
     4141 tactctgtca ttagggagct gcggcaggta ggtcaccatt caaggggagt cctacacctc
     4201 ccagaagagg gatccttctc tggcctttac aggcactagg cacacacatg gtgcacagac
     4261 aaacatccat gcagacaaaa cacacacaca ataaacaaac aaatcataaa taatgttttt
     4321 taaaggaaca aagggactgg agagatggtt cattggttaa gagcacttgc tgctcttgca
     4381 gaagatgttc agttcccaat actcatgcat cctataactc caggggattt cacactcttt
     4441 tctggcctct aaggcactgc aaacatctgg cacacacaca cacacacaca cacacacaca
     4501 cacacacaca cacacacaca caaatagtca ttaaaaagag ggagaggaga ggtagaggga
     4561 atccacagcc aaagcagtag ctgtccagca ccagtatcac gttacagaac ttcaggatta
     4621 tccatctact aatgaacacc atactgggtc ctaccctact acgtctgcag cagcatggac
     4681 atccatagca acctcttgac ctcctcaggc taatagcaac agcgtggagg tcttcagcaa
     4741 gtatttctac aacgccttcg aacattgtag aatagggttc agctttcata gttttctgag
     4801 caccgatgag ctgttgctta gggccaggta actgagatac cctgcttgcc ctggggtaaa
     4861 gcgggctttc cattctgctg gcccttttgg actcaacctg cttgagtccc attgcctggc
     4921 tggcagccag cccatcccaa tggcctacac ctcaactaca ggaagaaagg acccagaaag
     4981 gaagaaagat ttttatttcc ctgcctctgg gcccctgctg tggacatagc ctgcctttta
     5041 aatcctgagt gattgtgcca tcatcaagtg atgctgagac tgtatggggt ggagccccag
     5101 aaaaatatat cttcctatag aacagaaaga ctcatgagtc aataagggaa aaaaaaagca
     5161 cttgttgaaa attgagcagc ctatgagcag tgaacaagca gtccactaga ggcgaaaatc
     5221 ctccagatgg tgcattctta aaagccaaca gtggagggag gggccttcag gctctggtct
     5281 gtagtctgaa atgaggcctg cctgtgggaa ggagtatcag gatggttcag ccagctgagc
     5341 tgcaacccta gctctgtcct tcagatgaca gccttgagca aaatgccttt agacctgttc
     5401 cctcatttga aaaatggcga tgggatggcc tgtatcctat tggggaagac aaggtgggtt
     5461 aacttacaga aagcaaacca cacagcagac agggacagta gtaagcgctc agaaaaatgg
     5521 tacccttgga gcagtgggag aataaccaga cgtaagtcaa acaatcacct tgtcacagga
     5581 gccagcccgg cagatgttgg aagacctctg ggtttcgagg gctgaggaaa gggtctctta
     5641 ccgtttacac agtgctgact agccttgaag agcagcttta cagcacctga gacatcgcag
     5701 ctgcctacag taggactgga ggggcaagag gccaagcaca tatactaaga tgatccgtag
     5761 gacccctgct gcccttcctt caagggttcc tggcagagcc ctggagaaat gggattcttc
     5821 cagtcagaca tggctatacc tgcattgaag gagtccaaag gaggaggcat cgaacaggat
     5881 gaggagtatc ctgataaagg aacacaaagc tgatgtatca gaatgtagtt catatctgtc
     5941 gtcgcagtac ttgggagaca gaggcaggag gattgccatg acttggaaac aatcttgaac
     6001 aataaaaaca agagtaacag caatatgtac atacaaacct atgtacgtac atacatacat
     6061 gcaatcatgc atgcatgcat acatacatac atataaaggg acactaaaga atcaacagtc
     6121 catggaagtc gaagaccaaa gggcatgtgt tggtccagga atgcattcta ctctccactc
     6181 tgacatccat ggtaggcatt actaatcaat catagaccct gacctcaaca tccttttgaa
     6241 atcatgttcc tcatggtctc tactgtagtt ggcacaaaag aagaaatcta ggtagcacct
     6301 ttagtttatt ttcgtcccct tcggcctttt ccttttcatg gcttaccagc ctgacttgca
     6361 actgccattg gcctcccttt gcctcccaca ggccagtgaa gctagggata aggggatcgc
     6421 cagcagactc atccaatggc tggcagcatg ggctaagtgc tccagttccc tcaggtgcat
     6481 cttccccagt gtccccaaat gcctcacaga atctaggtgc tgccccatat cagtgagcag
     6541 tgtcttcttc accccagctc cctcactcca taccagcatg tccgggatcc ttccctttga
     6601 gacccactga cttctattct tgtcagaggg ccaagctctg agaaacctgc actcaagcac
     6661 ccctgcatct tcatgcctgt gaagggaagg gtctttcctg agccattggc aaggcccttg
     6721 taagaaccaa tgcttagctt gcccagccca ctgactacct atggtcttca acctccatgg
     6781 tttggcattt atttcccacc gcaagagaaa tggcccagca ggggaatctc tgatgggaac
     6841 gcctggacac atggaggtag gtactaccct tggggtgggc ctcggagcat ccatacctgc
     6901 ttccaggacc tctgtctcct ccacagactg cattgctaag gactctgctc catgctggga
     6961 tagaaggtat tctggaaagc agctagcgcc cacccagata ccatctcgaa aacgttaaaa
     7021 aatgtacctc tctatgcttt taacaatgct aatgtctatg cctctctttt atttattaat
     7081 gtatgtatgt agggggaggg gtgcgcgcat gcgtgtatgg agtcaggaca actttgtgga
     7141 gtaggcgttc tccttgcacc tgtacctggg actggaaaga aggtgctcag gcacctttac
     7201 ccactgaacc atcctgctgg ccctcagaac gtgactcgaa gcacaaacag cagcttgtca
     7261 tctgtggaat gggaagtgtc cctgtccaac tgcaacctag ggagacactt ggctgcccct
     7321 ggtgacaagg cagaggactc tacactgagc tctccttgtt ccacaacagt tcctggagat
     7381 gagtgttgga gccatgaaca aaatctgccc acagatgccg agagcaacat gaccactgga
     7441 aggaaaaccc gccctggagg tgaaggctgt ggccccctct gctactcacg ccgcggggcc
     7501 tgcctttctg tcttcctgct gcttctgctg gccatgcttg ccgccttgct cttgatcgtc
     7561 accatcctgg gacatccaca gcgcacacca gagcctcact cttgtgtgac actggccaac
     7621 aggacggggt tcttgtgcca tgaccgaagg tactgcatcc cggcccatgc cgtgtgtgat
     7681 ggcatccgca cctgtcctca tggtgaggac gaggctgaga acttgtgtcg agatttgccc
     7741 aagagcctcc ccagcttcct cctgaccacc tgtggaaacc cagactcctg gatctactca
     7801 gaccagaaat gtgatggcac caacaactgt ggggactgct cagatgagct gagcccagtg
     7861 actgcgtgcc caccctgtgg ccctgggtgg tggtattgca ctccaactgt gttcaggtac
     7921 tgcagctgtg tcccgagggt cctgtgccgg gacggagtgc agcactgctc tgactggtcc
     7981 gatgagtact cctgtcctgg accctgagtg agcctcatgg tctgggtcag catggaagct
     8041 ggcacccgga accttagacc ggagcaccga agcctacacc acaagggcag gaagaaacct
     8101 ttgtcatcca ccagtggcac ctagccccca tggtctctga acaggaattc aagtgtctca
     8161 gcctccacct gagcacttcc aatgacacgg agctcaccac catgttaggc agattctaac
     8221 aaagatgagg cggcctcctc catcacttta ggcctgtcaa tgagaccaca ggagaaatgc
     8281 tccttgactc cagggcagac ttgaagtccc aatcttgtca ttcctggaag agacaaatgt
     8341 gtggcttaaa taccaagtga gtttagccct gtgggtagaa aacaaagcac acacatttac
     8401 caccattcgg tgcctaaggc aggaactcaa ggcccctgga gcttcttgcc caactcacca
     8461 gcagccccga ctgatcacat gaggttgcac atggcacttg ggacctggaa tctttctagt
     8521 ttcccagtat cctagaggct tgtggctgtg gagtagaaga cccagagaca gtgcagctta
     8581 gaagaacccc tctatgcctt tagtcttagc ctctgccttg cttcacccca caattgcctg
     8641 caggtttata ttttggtcct gcagccagga cctatatacc ttgcatatct tctagcttta
     8701 caacacccac ccaggcaagg atgggtgtgc tcattagaca gatgaggaaa cagaggccta
     8761 ggggatgact tgcccagggt atactctgga actgggactc aaagtcagtc tgcagaactc
     8821 tgacctcagg gtcttcccca ctattaatgg ggaagagaga tgggctagag agatggctca
     8881 gcagttaaga gccatggctg ctcttccaga ggtcctgagt tcaataccca gcaaccacat
     8941 ggtggctcac aaccatctgt aataggatct gatgccctct ttgggtatgt ctgaagacag
     9001 ctacagtgtg cttatataaa taaaaaaata aatatttaaa aaaaa
//
