LOCUS       XM_039106118            1255 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lipocalin 3 (Lcn3), transcript variant
            X1, mRNA.
ACCESSION   XM_039106118
VERSION     XM_039106118.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1255
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1255
                     /gene="Lcn3"
                     /note="lipocalin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 76%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:502611"
                     /db_xref="RGD:1562745"
     CDS             1..540
                     /gene="Lcn3"
                     /codon_start=1
                     /product="vomeronasal secretory protein 1"
                     /protein_id="XP_038962046.1"
                     /db_xref="GeneID:502611"
                     /db_xref="RGD:1562745"
                     /translation="MKALLLTVSLCLVAALQAQDSSFLAFNNVNFSGKWFNKAMVSED
                     EFPISKVSPIFILVLNNGDLEFSVTFMMYGQCFEVTIILEKTDVPGQYTAWTPTFEGK
                     THLKVQVQPSSVKGHYMLYCEGDVEEMSFTMTQLMGKDPQEDLEALEEFKEFTQLKRL
                     VPENLLIPEQMETCEPESN"
ORIGIN      
        1 atgaaggctt tgctcctgac cgttagcctc tgtctggttg ctgccctgca ggcccaggac
       61 tcctcattcc ttgctttcaa taatgtgaat ttttccggga agtggttcaa caaggccatg
      121 gtgtcagaag acgagttccc aataagcaag gtctcaccca tttttatctt ggtgctgaac
      181 aacggagact tggagttttc tgtcacattt atgatgtacg gccagtgctt tgaagtgacc
      241 atcatcttgg agaaaacaga tgtgcctggc caatacactg cctggacccc cacatttgag
      301 ggtaagaccc acctgaaggt gcaggtgcag ccatcttctg tgaagggcca ctacatgctc
      361 tactgtgagg gggatgtgga ggagatgagc ttcaccatga cccagctcat ggggaaggac
      421 ccccaggaag atttggaggc cttggaggaa tttaaggagt tcacacagct aaagagactt
      481 gttccagaga acctgctcat acctgaacag atggaaacat gtgaaccaga gagtaactag
      541 tgggacacgc tgggacacgc tgggacacgc tgagacacgc tgggacacgc taggacacgc
      601 tgggataatc tgggacacgc tggggtaatc tgtgccatgc tgggacacgt tgggacacgc
      661 tgggacacgc tgagacacgc tgggacacgc tggggtaatc tgtgccatgc tgggacacgt
      721 tgggacacgc tgggacacgc tgggacacgt tgggacacgc tgggacacgc tggggtaatc
      781 tgtgccatgc tgggacacac tgggacacgc tgggacacgc tgggacacgc tgggacacgc
      841 tgggataccc tgacatacac tgcccagttg ccacccatcc agcaaacgtc ctgtccttag
      901 tctccttcag ggcttctggg gatttcctac ctgctggtgt atacctgcca tccctgtgtc
      961 cctgagccta ctctgaccat ggagcagaaa gtcctgggcc ctggatgagg atggccaggg
     1021 acaggtgggg tcatgatatc catatccttc atgcctccac ttgtcagtca cacccttggt
     1081 caccactaca tggacagagc ttttctgaga gaactcagca gaaaggaatt ccttgtccag
     1141 cactagctag ttttgcttct ctgtgagcct gtgatgctgc cccaaagcac ctaacattcc
     1201 caccccccca ccataaccag tcagtcactg taccctgctt gctcacaaac tctcc
//
