LOCUS       NM_001395074             705 bp    mRNA    linear   ROD 27-JUL-2024
DEFINITION  Rattus norvegicus lipocalin 12 (Lcn12), transcript variant 1, mRNA.
ACCESSION   NM_001395074 XM_039105843
VERSION     NM_001395074.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Peng,Y., Zhang,X., Liu,J., Liu,Q., Guo,C., Zhang,Y. and Lin,D.
  TITLE     Solution structure of the protein lipocalin 12 from rat epididymis
  JOURNAL   Proteins 79 (7), 2316-2320 (2011)
   PUBMED   21538546
  REMARK    GeneRIF: Solution structure of the protein lipocalin 12 from rat
            epididymis.
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Peng,Y., Liu,J., Liu,Q., Yao,Y., Guo,C., Zhang,Y. and Lin,D.
  TITLE     Conformational and biochemical characterization of a rat
            epididymis-specific lipocalin 12 expressed in Escherichia coli
  JOURNAL   Biochim Biophys Acta 1804 (11), 2102-2110 (2010)
   PUBMED   20692383
  REMARK    GeneRIF: rLcn12 could be involved in retinoic acid transport in the
            epididymis
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jun 3, 2021 this sequence version replaced XM_039105843.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ537492.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: lack of evidence for use of
                                                upstream AUG
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-160               JAXUCZ010000003.1  28713378-28713537   c
            161-297             JAXUCZ010000003.1  28712829-28712965   c
            298-374             JAXUCZ010000003.1  28712071-28712147   c
            375-497             JAXUCZ010000003.1  28711885-28712007   c
            498-599             JAXUCZ010000003.1  28711651-28711752   c
            600-705             JAXUCZ010000003.1  28710557-28710662   c
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..705
                     /gene="Lcn12"
                     /note="lipocalin 12"
                     /db_xref="GeneID:680602"
                     /db_xref="RGD:1589474"
     exon            1..160
                     /gene="Lcn12"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..628
                     /gene="Lcn12"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; epididymal-specific lipocalin-12"
                     /codon_start=1
                     /product="epididymal-specific lipocalin-12 isoform 1
                     precursor"
                     /protein_id="NP_001382003.1"
                     /db_xref="GeneID:680602"
                     /db_xref="RGD:1589474"
                     /translation="MGPWWALWLILTLPQILGGQSPTMPQGFSQMTSFQSNKFQGEWF
                     VLGLADNTYKREHRPLLHSFITLFKLRDNSEFQVTNSMTRGKHCSTWSYTLIPTNKPG
                     QFTRDNRGSGPGADKENIQVIETDYVKFALVLSLRQASNQNITRVSLLGRDWKITHKT
                     IDRFICLTKTQNLTKNNLLFPDLTDWLLDPKVC"
     exon            161..297
                     /gene="Lcn12"
                     /inference="alignment:Splign:2.1.0"
     exon            298..374
                     /gene="Lcn12"
                     /inference="alignment:Splign:2.1.0"
     exon            375..497
                     /gene="Lcn12"
                     /inference="alignment:Splign:2.1.0"
     exon            498..599
                     /gene="Lcn12"
                     /inference="alignment:Splign:2.1.0"
     exon            600..705
                     /gene="Lcn12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacctcggt caggctatgt ccctctggag tctggtggct gttgggatgg gaccttggtg
       61 ggctctgtgg ctgatactca ccctgcccca aattttgggg ggtcagagcc caaccatgcc
      121 tcaaggcttt tcccagatga cgagcttcca aagcaacaag tttcaggggg agtggtttgt
      181 cctcggtctg gcagacaaca cctacaagag agagcaccgg cctttgctgc attcctttat
      241 cacgctgttc aagctgagag acaacagtga gtttcaggtg accaactcca tgactcgggg
      301 caagcattgc agcacttggt cctataccct gatcccaaca aacaagcctg ggcaattcac
      361 cagggacaac agagggtcag ggcctggggc agacaaagaa aacatacagg tcatagagac
      421 agactacgtc aagttcgccc tggtgctgtc cctcagacag gcaagcaacc agaacatcac
      481 cagggtcagc cttctgggta gagactggaa gataactcat aagacaatag acaggttcat
      541 ctgcctgacc aagacccaaa acctcacaaa gaacaacctt ctcttccctg atttaactga
      601 ctggttactg gatccaaaag tctgctgaag aaggaaacag ttcctgccag taaagcctca
      661 gcctgccatt gctctcaaca taaataaaca cccagtgtga ctctg
//
