LOCUS       NM_001011956            2150 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus leucine carboxyl methyltransferase 2 (Lcmt2),
            mRNA.
ACCESSION   NM_001011956 XM_215811
VERSION     NM_001011956.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2150)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083783.1.
            
            On Feb 11, 2005 this sequence version replaced XM_215811.2.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC083783.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..2150
                     /gene="Lcmt2"
                     /note="leucine carboxyl methyltransferase 2"
                     /db_xref="GeneID:296098"
                     /db_xref="RGD:1305829"
     exon            1..2125
                     /gene="Lcmt2"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..2112
                     /gene="Lcmt2"
                     /EC_number="2.1.1.290"
                     /EC_number="2.3.1.231"
                     /note="tRNA yW-synthesizing protein 4 homolog; tRNA
                     wybutosine-synthesizing protein 4 homolog; tRNA(Phe)
                     (7-(3-amino-3-carboxypropyl)wyosine(37)-O)-
                     methyltransferase; tRNA(Phe)
                     (7-(3-amino-3-(methoxycarbonyl)propyl)wyosine(37)-N)-
                     methoxycarbonyltransferase"
                     /codon_start=1
                     /product="tRNA wybutosine-synthesizing protein 4"
                     /protein_id="NP_001011956.1"
                     /db_xref="GeneID:296098"
                     /db_xref="RGD:1305829"
                     /translation="MGPRSRQRRTGTVQSTNDSSSLSKRSLAAQGYVSDAFAPLLVPG
                     IVRRTPLIHRGYYVRARAVRHCVRAFLDLTGAIRSPTRAQILSLGSGSDSLYFRLKAA
                     GLLTRTAVWEVDFPDVSRLKAKRIEETPELCAQTGPFKIGDSASTLCFESSDYRILGA
                     DLRELQRLGEALDSAGLDATSPTLILAEAVLTYLEPSRAAALIAWVAQRFPNALFVIY
                     EQMKPGDAFGQIMLQHFRRLNSPLHGLELFPDVEAQRQRFLQAGWTTCSALDLNEFYR
                     RLIPADERRRVETLEPFDEFEEWHLKCSHYFILAASRGDILSETPVFLPSEASFQIDP
                     ALPSGFLSASVVTSDHQHSSLQRYGHTSVLLSPGIIFSAGGFGEQEGRHCRVSRFHLL
                     SRSCDSEWKGCQISTLGTEGQWDGRLYHTMTRLSDTRVLVLGGRLSPVNPASGALQLD
                     IYKSEDNCPEGQNVVVTKAALEEGSMLSCWRHSTTEVYYQNQRYLFVYGGRSVTDPVL
                     SDCRFLHVETMAWVRIPVQGSSPEGRHSHSACSWQGGALIAGGLGASEEPLSSVFFLR
                     PVSSGFLWESIHIQPSITPRYSHTAHVFNGKLLLVGGVWIHSSSVPGVTVISLTTGLS
                     SEYQIDTASVPWPLMLHNHSSALLPEEQQLLLIGGGGNCFSFGTYFNPHTVGLDLSSL
                     GLGQ"
ORIGIN      
        1 ctggagttcg gtgaacgttc tgtgtggaga attgcggagc gccttctggt catgggcccg
       61 cgaagccgcc agcgccggac ggggacggtt cagagcacca atgacagcag ctccctcagc
      121 aagcgatcgc tagccgcaca agggtacgtg agcgatgcct tcgcgccgct gctggtccca
      181 gggatcgtgc ggcgcacgcc gcttatccac cgcggctatt acgtgcgcgc gcgcgccgtg
      241 cgtcactgcg tgcgcgcctt cctcgatctc actggcgcga tccggtcccc gaccagagca
      301 cagatcctgt ccctgggctc aggttccgac tcgctttatt ttcgtctgaa agctgcgggc
      361 ctgctgaccc gaactgctgt ctgggaggtg gactttccgg acgtgtctcg gctcaaggcg
      421 aagaggatcg aggagacccc ggagctgtgc gcgcagaccg gtcctttcaa gatcggggac
      481 tcagcgtcaa ctctgtgctt tgagagctcg gactaccgca tcctgggcgc tgacttgcgg
      541 gagctccagc gattgggcga ggccctggac agtgctggcc tggacgccac ctccccaacg
      601 ctgatcctgg ccgaggcggt gctgacctac ctggagcctt ccagagctgc agccctcatc
      661 gcctgggttg cccagcgttt ccccaacgcc ctttttgtga tctatgagca gatgaagccg
      721 ggtgatgcct tcgggcaaat catgctgcag cactttcggc ggttgaactc acccctgcat
      781 ggactggaac tctttccgga cgtggaggcc cagcgccagc gcttcctaca agctggctgg
      841 actacttgca gcgccctgga cctgaacgag ttctatcgcc gccttatccc tgcagatgag
      901 cgccggcgag ttgagacact tgagcccttt gatgaatttg aggaatggca tctgaagtgt
      961 tcccactatt tcatcctggc agcatctagg ggagatattc tgtcagaaac tccagtgttt
     1021 ctgccctcgg aagcttcttt tcagatagat cctgctttgc cttcagggtt tctttctgcc
     1081 agtgtagtca ctagcgacca ccagcactca agtctgcaga gatatggcca cacctctgtt
     1141 ctcttgagcc ctggcattat tttcagtgca ggaggctttg gagaacaaga gggccgacac
     1201 tgccgggtga gcaggtttca cttgctctcg agatcctgtg actctgaatg gaaaggctgc
     1261 caaataagta ctttggggac tgaaggccag tgggatggac gcctttatca caccatgaca
     1321 aggctttcag atactcgggt tctggttctt ggagggagac tatccccagt aaatccagcc
     1381 tctggggctc tccaacttga tatatacaaa agtgaggata attgccccga gggccaaaat
     1441 gtagtggtaa caaaggctgc cttggaagaa gggtccatgt tgtcatgttg gaggcattca
     1501 acaaccgaag tatactatca gaatcaaaga tatttatttg tgtatggtgg tcgaagtgtg
     1561 acggatcctg tactaagtga ctgtcgtttt ctacatgtag agacaatggc ttgggtcaga
     1621 atcccagtac aaggctcatc acccgaaggt cggcattccc acagcgcctg cagttggcaa
     1681 gggggagcac ttatcgctgg aggtcttggg gcttctgagg aaccgttgag ttctgtattc
     1741 tttctcagac cagtatcctc tggattcctc tgggaatcaa tacatatcca gccctccatt
     1801 accccaaggt actctcacac tgctcatgta tttaatggaa agctgcttct ggttggaggg
     1861 gtctggattc attcctcctc agttcctgga gtgactgtta tcagtttgac tacagggttg
     1921 agctccgagt atcagattga caccgcgtct gtgccatggc cattaatgtt gcacaaccac
     1981 agcagtgccc tccttcctga agagcagcag ctcctgctta ttggaggcgg agggaactgc
     2041 ttttcctttg gtacttactt caacccccac acagtgggat tagatctttc ctccttaggt
     2101 ttagggcaat aaagactgga cttgaaaaaa aaaaaaaaaa aaaaaaaaaa
//
