LOCUS       XM_039113079            4539 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lysocardiolipin acyltransferase 1
            (Lclat1), transcript variant X3, mRNA.
ACCESSION   XM_039113079
VERSION     XM_039113079.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113079.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4539
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4539
                     /gene="Lclat1"
                     /note="lysocardiolipin acyltransferase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 19 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:362702"
                     /db_xref="RGD:1565906"
     CDS             221..1351
                     /gene="Lclat1"
                     /codon_start=1
                     /product="lysocardiolipin acyltransferase 1 isoform X1"
                     /protein_id="XP_038969007.1"
                     /db_xref="GeneID:362702"
                     /db_xref="RGD:1565906"
                     /translation="MVSWKGIYFILFLFAGSFFGSIFMLGPILPLMFINLSWYRWISS
                     RLVAMWLTLPVALLETMFGVKVVITGDAFVPGERSVIIMNHRTRVDWMFLWNCLMRYS
                     YLRLEKICLKSSLKSVPGFGWAMQVAAFIFIHRKWKDDKSHFEDMVDYFCAIHEPLQL
                     LIFPEGTDLTENNKARSNDFAEKNGLQKYEYVLHPRTTGFTFVVDRLRERRNLDAVHD
                     ITVAYPYNIPQTEKHLLLGDFPKEIHFHVHRYPVDTLPTSKEDLQLWCHKRWEEKEER
                     LRSFYQGEKNFHFTGQSTVPPCKSELRVLVVKLLSILYWALFCSAMCLLIYLYSPVRW
                     YFIISIVFFVLQERIFGGLEIIELACYRFLHKHPHLNSKKNE"
ORIGIN      
        1 tactaaggcg acgggctcga cgcctccccg cttcgggatg aattagcggc gggttctgct
       61 cgcaggttgt gacccccgtg agtcgcagtt tcgccccagt gtccccgcga cgtcgcgcgt
      121 tccccccggc gtgtcccagg atgatgaaag gactggatat gttggccatt tgtccaagaa
      181 ggaaagaagg agaatcaaca gtggcataag caagagaatc atggtgtcat ggaagggaat
      241 ttactttata ctcttcctgt ttgcgggaag cttttttgga agtattttta tgcttggtcc
      301 cattttacct ttgatgttta taaacctgtc atggtatcgc tggattagca gccgtcttgt
      361 ggctatgtgg ctaacacttc ctgtggcatt gttggaaacc atgtttggtg tgaaagtagt
      421 tataacagga gatgcattcg tacctggaga gaggagtgtc attatcatga accaccggac
      481 aagggtggac tggatgttcc tgtggaattg tctaatgagg tacagctacc tcaggctgga
      541 gaagatttgc ctcaaatcca gtctcaaaag tgttcctgga tttggctggg ccatgcaagt
      601 tgctgccttt atctttattc ataggaagtg gaaggatgat aagagccatt ttgaagacat
      661 ggttgactat ttctgtgcca tccatgaacc actacaactt ctcatctttc cagaaggaac
      721 tgacctcaca gaaaataaca aggctaggag taacgatttt gctgagaaga atggacttca
      781 gaaatatgag tatgtattac acccaagaac caccggcttt acttttgtgg tggaccgtct
      841 aagagaacgt aggaacctcg atgctgtcca tgacatcacc gtggcatatc cttacaacat
      901 tcctcaaacc gagaagcacc ttctgcttgg agactttccc aaggagatcc acttccatgt
      961 ccataggtat ccagtcgaca ctcttcccac gtccaaggag gaccttcagc tctggtgcca
     1021 caagaggtgg gaagaaaagg aagagaggct tcggtccttc taccaaggag aaaaaaactt
     1081 tcactttact gggcagagca cagttccacc gtgcaagtct gagctcagag tccttgtggt
     1141 caagctactg tccatactgt actgggccct gttctgctct gcaatgtgcc tgcttatcta
     1201 tctctacagc cctgttcggt ggtattttat aattagcatt gtgttcttcg tgctgcagga
     1261 gagaatattt ggtggactgg aaatcatcga acttgcatgt taccgctttt tacacaagca
     1321 cccacattta aattcaaaga aaaatgagta agacggtggc gttccctgtg aaaacctagg
     1381 attgtcacgg gaatgtcata gtctttgtaa actgagatga gttttgcatg actatgtcaa
     1441 atgtttctac tgtcgtcatt ctttgttaaa gacattttgc acttaatttt gtgggggaaa
     1501 tattgctatg gtttctttaa aaatctctga atgtaattcc aatgctgtgt atgtagcagg
     1561 ggtcaatcgc tgtgaatgac tagggccaga gtattagaaa caatcaccaa gctgttgaga
     1621 caagatgcaa gcttttctga aagaccaacc tgtttctgac agactcagct cagaggcagc
     1681 cctggcacca tgaacgccag ccctaggaga tctaagcagg tagttgtctg cctcccccac
     1741 ggggcacagt ccattcttta gttcttttac accaatcaaa cccaacagtg gaattgtctt
     1801 gtctgagact ggtcaccatt aatagggacc ttgtgctgaa tgagacagga aaagaccctc
     1861 tcctcacctg gaaatcatag agcaccatca ggctctccgc ttggctttta agagacagaa
     1921 accagtgcag cttgcttttc actcactcag tcctgccctc ctgatggtta ccaggtatga
     1981 cttcatcttt agtgtgcact gctacatgta aagatgcatt agaacagcat ctgtattcca
     2041 gacagaaact ggaaggcagt atatgtccta agcatgcagg gtgtctacct tctgccatta
     2101 gagctacaac gaacatgccc acagacaggg tggttagcta aagcacccac accctgacaa
     2161 ccttaccctt aaaaccaaaa atgctaagtt agaatgaact cattcagtga tagcaaggac
     2221 gctctctctt tttagtcatc tattgagtta catctaaaca cacaatgacc aactgcctgc
     2281 caagtattgc tgtcttttgg aagcagtgaa aacatagcaa accaacagca cccagtgtcc
     2341 tgggcagggg aatcctgtgg ccattgtttc cgctccactg gactgcctgc tcctatctgt
     2401 gtcatgtgat tggggcagag gcacataagc ttcccactgt gtccggcagt ctcagcagcc
     2461 attactgccc tgtcctgaat gatggcagcg tgcatctgcc tggcaaggac ttagctcacc
     2521 aagcacactc tgaggaagcc ctgttgggga caggagaaca ccatgagcat atcatggtta
     2581 agtctggtgt ttggtgtttg tgcatgtgtt ggtgggaggg tgctaactgg tgcctccgga
     2641 gaaacacacc agcccatgtt taactgctcc atcgaagctc actttactcc tggccggact
     2701 taatagtcag tagtcatgca cacctgctct caacacagct gttgggcttt atagttttta
     2761 aggtaacaca cacacacaca cacacacaca cacacacaca cacacacaca ccacacacac
     2821 acacaccaca catacacaca cacatacaca ccacgcacac gcacacacac acacacacac
     2881 acacacacac acacacacac acacacacca cgcacgcaca atctctcccc ctttttcttt
     2941 ccccaatgag aaaggcttcc tctgagactt ccgtggatca catttaaagg tggaaatagc
     3001 tagcaatcaa aattgcattt gttccccagg taaagggaga tgctgtcggc tttgcccaca
     3061 gtggctgggc tccattaatg gtgacgtccc tctcattgtg caccctcaga ctctctgtct
     3121 cttgttcttc ttcccttcga cctcttctga tcatagaaaa cattaaggta gaaaatacct
     3181 taattttact ttatctaccc aaattcataa tactaagtat agcactaaag ctagagaatg
     3241 tggatactct acttgcttaa gagaaatttc tctgaaaggg ggaaaaaccc ttttaaataa
     3301 aagattttaa attataatta cttacttata cctacatgtt taactttgtt aaaattgttt
     3361 atttaatttt aaaaatacac atatagctaa tgctttgagc taagaactgc tttaagtccg
     3421 tacttgagca tcaggtataa gcagatgtgg ccttgatggt tgtcagcctg aggaatgccc
     3481 ctgccacacc ttcagccagg gctcagtagc tgcagccctg ctccagcaga ccctgccctg
     3541 ctccctgtgc tggtgagtaa aatggacgga gaagtgctca cagtgctagt cggctagttg
     3601 atcccattct aggagacttt acaaatagtg ggtgtgggtt atttatactg tgaaccactt
     3661 cactttaaaa tatggaccca tatagaggaa agaactggct gggtgaggag ttcccacatt
     3721 aggtgtcttt gaaacaaacc caaggaatcc taaactttag tcagccaacg tggcagggct
     3781 gtggggagac tgaaagggaa atagaaaaat atctgcaaga gctcatcacc gaagactctc
     3841 cctaaaatcc tgcctccctc cgcatgctca cagaacaaac ccgagaagaa gcagcatctt
     3901 ccactcaaca tgttctgatg gtgaccgctg cacacgcagg ccgtatgttg gtacccaagt
     3961 ctgaattctg cagacaggtt cctatttcac cggctctcaa gtacagtcac gacaaagact
     4021 atcgagggag cctgtcggtg taaaattgtt tacatttctt tctataaaat aatgtgcttt
     4081 cagtgcctta gttatggctc cctttctttt tcctgttcta agaattctat accgtgttct
     4141 tggataaagt ctctccttgt cactcactag gagaaaaatg gtgtcccaac accagtcagt
     4201 ggttgacaga agtgacaaaa ccctatgttg aaacatggaa aagatagctc ggtgctgagc
     4261 tagtggctgc ctagagttct tacactgtgg aaaacaattg cttggccacg caatgaactt
     4321 tacaccacat gtggccctaa aggtgtcttg tacccaccta aaatttttat ttcagagtct
     4381 tggttttggt aactcatttt taaaagatca ttacacggag aacaccaagt tttaaaacta
     4441 actcacagaa tggccttagc ttcagtgtcc actgggatgt ttatgaatta cctgtaaaat
     4501 gcatccagaa taaagtggag tgaattacat ggttcaaaa
//
