LOCUS       NM_001415728            3117 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus lebercilin LCA5 like (Lca5l), mRNA.
ACCESSION   NM_001415728 XM_006248178
VERSION     NM_001415728.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3117)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Dec 27, 2022 this sequence version replaced XM_006248178.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.68694.1,
                                           SRR26360194.1966250.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                JAXUCZ010000011.1  48964501-48964551   c
            52-209              JAXUCZ010000011.1  48957642-48957799   c
            210-285             JAXUCZ010000011.1  48952030-48952105   c
            286-617             JAXUCZ010000011.1  48950522-48950853   c
            618-1132            JAXUCZ010000011.1  48948546-48949060   c
            1133-1270           JAXUCZ010000011.1  48945188-48945325   c
            1271-1355           JAXUCZ010000011.1  48935846-48935930   c
            1356-1459           JAXUCZ010000011.1  48934648-48934751   c
            1460-1577           JAXUCZ010000011.1  48934211-48934328   c
            1578-1688           JAXUCZ010000011.1  48933027-48933137   c
            1689-3117           JAXUCZ010000011.1  48930127-48931555   c
FEATURES             Location/Qualifiers
     source          1..3117
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..3117
                     /gene="Lca5l"
                     /note="lebercilin LCA5 like"
                     /db_xref="GeneID:498065"
                     /db_xref="RGD:1562512"
     exon            1..51
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            52..209
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            210..285
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     CDS             281..2485
                     /gene="Lca5l"
                     /note="Leber congenital amaurosis 5-like; LCA5L,
                     lebercilin like"
                     /codon_start=1
                     /product="lebercilin-like protein"
                     /protein_id="NP_001402657.1"
                     /db_xref="GeneID:498065"
                     /db_xref="RGD:1562512"
                     /translation="MRLWTMSLADTTEAHTNEHFPSLALGSNRKSAEGKHSPGAGGLS
                     RNSRASSGSVDYSRSRCSCTSLTSRYDYSEDFLSECSETAVSRHQPEQLLGKEKEKRK
                     YNTCKFPQPKGQKDIPAEKRHIWNASFFSSQIQTIAKRRDTMTHRILSARLHKIKELK
                     NELADIHRKLEATILENQFLKQLQLRHLKAIGTYVNSQNNLPQITVKHQNEVKNLRQL
                     LRKSQEKERAVSRKLRETDSELLRTKDALQALQRLSEDKNLAEREELTHRLTDLTAKM
                     EANDKKIQNLEKQLRLNNRSFSRQLAKENRKTLAAQTATKALQAEVRQLQQKLKEKDR
                     ELEIKNIYTNRILKNLHDKEDYPKVSSTKSVQADRKSLPFVNVRHQETQKSDVPFWIT
                     KDKKAKGNIVHKEKSTEINHDISYHVRKLPRQEESKRKCEANLTVLKNMPSPRVSWEQ
                     VATEQICAFHLECHSCTQTDLSKEVEHPKPQTSLETPRRPKERKEDQEKRAIPEEAEP
                     TAKGSEVPEDAEDKALARAACDVGDAGDAGDAGDADHASDAGDVRDVVEDSEVIGAHE
                     LPGANQAGEVHGASEAGDVEPGRGRRKTPRSRKHYSFTEATENLHHGLPTSCRQASGS
                     PHCRCRHCTGKHRSEQELRLEPAGYEPSFGKAARTRARATAFRDRKSSLMEELFGSGF
                     AGRAGPNDGEAPSKSPQPGPQASAGNAFGDSKATVARSIQASPPEANRKTAV"
     exon            286..617
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            618..1132
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1270
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1355
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            1356..1459
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1577
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1688
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
     exon            1689..3117
                     /gene="Lca5l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgcttcctt aggtcccggg tggaggcagc tgctgtagga gcgtggagca gggttttttg
       61 aaatatagtc tttgtgtaaa aagagactag aacatgtcaa aaagtcttac cttggaaact
      121 tcatgagtcc cacagtgaag agtgatccgc atgcaacata cagttcatct ccagacacct
      181 taggaaatga atttgagaaa aagcaacaga atcgagagct gaataaaaga gccatgcatt
      241 taaagacacc tgcaatggat tggtttggtt catcctactg atgaggttgt ggactatgtc
      301 tttggctgac acaacagaag cacacacgaa tgagcatttc cccagtctgg cattaggaag
      361 caacaggaag tctgcagaag gcaagcatag ccctggtgct ggcggcctgt cacggaacag
      421 ccgggcttcc agtgggagcg tggactacag caggtcccgg tgctcctgca caagcctgac
      481 ttctcgctat gactactcag aagactttct ctctgagtgc tctgagacag ctgtcagcag
      541 acatcagcca gagcagcttc tggggaaaga aaaggagaaa agaaagtata acacatgtaa
      601 attccctcag cctaaaggcc agaaggacat cccagctgag aaaaggcaca tctggaacgc
      661 ttcatttttc agttctcaaa tccaaacgat tgccaagaga agagacacca tgacacaccg
      721 gatactgtca gccaggctcc ataagatcaa agagctgaag aatgagctgg ccgatataca
      781 ccggaagctg gaagccacta tcctagaaaa ccagtttctg aagcagcttc agctcaggca
      841 cctgaaagcc atagggacat acgtgaactc tcagaacaat ctacctcaga ttacagtcaa
      901 gcaccagaat gaggtgaaga accttcgaca gctcctccgg aaatcccagg agaaggagcg
      961 agctgtgtcc aggaaactcc gagaaaccga cagcgagtta ctgaggacca aagatgcctt
     1021 gcaagccctg cagagactct cagaagacaa aaaccttgca gagagagaag aattgactca
     1081 caggttgacc gatcttacag ccaaaatgga agcaaatgac aaaaaaatac agaacttgga
     1141 aaagcagctg cggctgaaca atcggtcctt tagtcggcag ctggccaaag aaaatcggaa
     1201 gacgttagca gctcaaacag caaccaaggc cctgcaggca gaagtgcgac agctgcagca
     1261 gaagctgaag gagaaggatc gtgagctgga aatcaaaaac atctacacta atcgaatact
     1321 taaaaactta catgataagg aagattaccc gaaagtttct tccacaaaat cagtccaagc
     1381 agacagaaaa agtttgccat ttgtaaatgt gagacaccag gaaacccaaa agtcagacgt
     1441 cccattttgg ataactaagg ataaaaaggc aaaaggaaac attgttcata aagaaaagtc
     1501 aacagaaata aaccatgata tttcttacca tgtgcgtaaa ctgccaaggc aagaggagtc
     1561 taagagaaaa tgtgaagcaa acctcacggt cttaaagaac atgccatccc ctcgagtgtc
     1621 ctgggaacag gtggccactg agcagatctg tgccttccat ctagaatgtc actcctgtac
     1681 ccagacagat ttatcaaagg aggtcgaaca cccgaaacca caaacctccc tggaaactcc
     1741 taggagaccg aaagagagaa aggaagacca agaaaagaga gccatcccag aagaagcaga
     1801 gccaactgca aaggggagcg aggtccccga ggatgctgag gataaggccc tggccagggc
     1861 ggcctgcgat gtaggagatg cgggcgatgc aggtgatgca ggagatgcgg accatgcaag
     1921 tgatgccggc gatgtccgcg atgtcgtcga ggacagcgag gtgattgggg cgcacgagct
     1981 gcccggggcg aaccaggcag gcgaggtgca tggggcgagc gaggccggtg atgtggagcc
     2041 cggacgcggc cggaggaaga ccccgcggtc acgtaagcac tactccttca ccgaggccac
     2101 cgagaacctg caccacgggc tgcccacctc ctgcagacaa gcctcgggta gcccgcactg
     2161 ccgctgccgc cactgcacgg gcaagcaccg cagcgagcag gagctgcggc tggagcctgc
     2221 tggctacgag ccctcattcg gcaaggcggc caggaccagg gccagggcga cggcattccg
     2281 cgacagaaag agcagcctca tggaggagct gttcggctcc ggcttcgcgg gcagggcggg
     2341 ccccaacgac ggcgaggcgc ccagcaagtc cccgcagccc gggccccagg cctcggccgg
     2401 caacgccttc ggggactcca aagccaccgt ggcgcgctcc atccaggcct cgccccccga
     2461 agccaacagg aagactgctg tttaaatgca gcagtcgcct gttacattct ggtttatata
     2521 ctagttatgt gccttaatct tatttaccat agtgtctgtt ttagtacttg ggtggactgt
     2581 gggtaatttg ggtaatttgt gtgattgcta tctaataaaa aaaaaaatcc actgtacctt
     2641 ggtcatatgg tgacatttta aatacaaaac tacatcttta ttatgaaggc ggaacatcca
     2701 tacccactct ttttagtaag actgggttta ttacgtaatc cgggactcac agttgattct
     2761 tggccagcct aaggtgcata cattctgtca gcaagactgc agtcgtcaca actatatgga
     2821 agaggtctga tcaacaagct ggccagcaga cacagacacc ccaagggttc aggcttagcc
     2881 tgtcattgct ggtagtctct tgtcagctga gctgagagca cctatgccgc ctgcctctct
     2941 gagcctgtat agaagtctgt attttttgtt attgttgcaa tttattattt ctttttgtta
     3001 cacaatgacc gtttctctta atcttgttct aaaacaactg tatgtccaag ctggctgctc
     3061 aggtctaatt ctaacagtat tttgttggga ctataaaggg tctgtattcc cagtcta
//
