LOCUS       XM_039081163            3094 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus lebercilin LCA5 (Lca5), transcript
            variant X8, mRNA.
ACCESSION   XM_039081163
VERSION     XM_039081163.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3094
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3094
                     /gene="Lca5"
                     /gene_synonym="RGD1308555"
                     /note="lebercilin LCA5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 15 long SRA
                     reads, 2 Proteins"
                     /db_xref="GeneID:300866"
                     /db_xref="RGD:1308555"
     CDS             392..2575
                     /gene="Lca5"
                     /gene_synonym="RGD1308555"
                     /codon_start=1
                     /product="lebercilin isoform X1"
                     /protein_id="XP_038937091.1"
                     /db_xref="GeneID:300866"
                     /db_xref="RGD:1308555"
                     /translation="MGERDQSSDTDQERKGGKHPYSSHYSSDFGSSPQSSGPSSPVNT
                     PPCASNREKNPKRHLSDHHVRHQTVRKVSPKAIPNKKGVRVGFRSQSLNREPLRKDPD
                     IVTKRVLSARLLKITELQNEVSELQVKLAQLLKENKALKSLQYRQEKALSKFEDAENE
                     ISQLIHRHNGEITALKERLRKSQEKERMAEKRVKDTEGELFRTKFSLQKLKKISEARH
                     LPERDDLAKKLVSAELKLDNTERKIKELSKNLELSTNSFQRQLLAERKRAFEAHDENK
                     ILQKELQRLHHKLKEKEKELDIKNIYANRLPKSSPKKEKEIARKHASCQSDFTDLCTK
                     AVQTAEDFEPEEFPFTAQTVLCYENRWDGSEYLPSYLEYQERNEHGSESLSSTLEQEG
                     KYSDDQDSCTAKQETGKSECEWEREELDKVKGKSSLLGRTEKLVLEAGSVQTESYQAQ
                     TIDKFQDEAERLKTEMLLAKLNEINKELQDPQSLSRPLLPLLPNFESKLYSPDRSLRP
                     YTFSESLDRSFNGQHLSDMSFLTPRDEGQSPGLIRSPAPSDEFSFGSYVPSFGKTPGK
                     SNPPSQKNSLLDFQSNMSEGLSKDSLDFISRKEKKATLMEQLFGTSASASATNTSAST
                     TTNTTTNTNTNTNTNTNTNCNVPSKSIDSHFPAASRGDLDPLHFLSGDRSSRVREPDG
                     EDEDLFLSEGRSFNPNRHRLKHTSTKPTVTAVDSIDEDIEEVTLR"
     polyA_site      3094
                     /gene="Lca5"
                     /gene_synonym="RGD1308555"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gaggaggaga gggcagcgtc atggcttaga taatgtaggt tcaggtggga ggcttaaatc
       61 cggggagacc tgcggctcat cacaacctca cactcaccgt cctttcagtc accttacgag
      121 ccacaaatag aaccacaggg cggtgagaga agatgcagag cgtccttcct caggttgctg
      181 cccgagcaga atgagccgac tcctccggat ccccggatta agagcaaatg aagtgtatct
      241 tgtgtttact ggtgtggact acagacatac tgtgaagaaa acaaactgca cataaataat
      301 tattaccagg acaccgaggc tgcaaaaaca ttcttcagta cttccacgaa tctgtaaaac
      361 gatgtgacta gagaggtcgt ttttccaaac aatgggggaa agggaccaaa gttcagatac
      421 tgatcaagaa agaaaaggag gcaaacaccc ttactcgtcc cattactcgt ctgacttcgg
      481 gtcctcacca cagtcttctg gcccctcgtc acctgtcaac acgccaccat gtgccagtaa
      541 tagggagaag aatcccaaaa gacacctgtc agaccaccac gtgcgccacc aaaccgttag
      601 gaaagtgagt cctaaggcta tacccaacaa aaagggggtc cgagtgggat ttcggtccca
      661 aagcctcaac agagagccac ttcggaaaga tccagatatc gtaacaaaga gggttctttc
      721 tgcaagactt ctgaaaatca ccgagctgca gaatgaagtg tctgaactac aggtcaagtt
      781 agcccagctg ctcaaagaaa acaaggcttt gaaaagtctg cagtatcgtc aggagaaagc
      841 actgagtaag ttcgaagatg cagagaatga aatctcacaa cttatacacc gccataacgg
      901 tgagattact gcgctcaaag aacgcttaag aaaatctcag gagaaagagc ggatggcaga
      961 gaaaagagtg aaagacacag aaggggaact atttaggacg aaattttccc tacagaaact
     1021 aaaaaagatc tctgaggcca gacacctacc ggagcgagac gatttggcca agaaactagt
     1081 ttcagcagag ttaaaattag acaacaccga gagaaagatt aaggaactat cgaagaacct
     1141 ggagctaagc accaacagct tccagcggca gctgcttgct gaaaggaaaa gagcgtttga
     1201 ggctcacgat gaaaataaaa ttctccaaaa ggagctgcag cggctccacc acaagctgaa
     1261 ggagaaggag aaagaattgg atataaaaaa catctacgct aatcgcctgc ccaagtcctc
     1321 tccaaagaaa gagaaagaaa ttgcaagaaa gcatgcatcc tgccagagcg actttacgga
     1381 cctgtgtaca aaagcagtac agaccgctga agactttgag ccggaagagt ttcctttcac
     1441 agcacagaca gtcctttgtt atgaaaacag atgggacggg tcagaatatc ttccttcgta
     1501 cctggaatac caggagcgaa atgagcatgg gtcagagagt ctaagctcaa ctttggaaca
     1561 agaaggaaag tacagcgacg accaggattc atgtactgca aagcaggaga ccgggaagtc
     1621 tgaatgtgaa tgggaaagag aagagcttga taaggtgaaa ggcaagtcat ctttgctagg
     1681 gagaacagag aagctggtgt tagaagctgg aagtgtccaa acggaaagtt atcaagctca
     1741 aacgattgat aaattccaag acgaggcgga aagactaaag acagaaatgc ttcttgccaa
     1801 actgaacgaa atcaacaaag aactccaaga tccccagagc ctcagccgac cccttttgcc
     1861 gttgctaccc aacttcgaat ccaagctgta ctctccagac agaagcctca gaccttacac
     1921 gttctcggag tccttagaca gatcatttaa tggacaacat ttgtcagaca tgagtttttt
     1981 aactcccagg gacgaaggcc agagtccagg actgatcaga agtccagctc cttcagatga
     2041 gttctcattc ggtagctacg tgccttcgtt tggaaaaaca ccaggaaagt caaatccacc
     2101 tagccaaaaa aatagccttt tagatttcca aagcaacatg tctgagggcc tgagtaaaga
     2161 cagtctagat ttcatttcaa ggaaagagaa aaaggcaacc ctgatggagc agctgttcgg
     2221 caccagcgcc agcgccagcg ccaccaacac cagcgccagc accaccacca acaccaccac
     2281 caacaccaac accaacacca acaccaacac caacaccaac tgcaatgtcc cctccaagag
     2341 cattgactca catttccctg ctgccagcag aggtgacttg gaccctcttc atttcctctc
     2401 cggggacaga agcagcagag tccgggagcc tgatggtgaa gatgaagacc ttttcctcag
     2461 cgaaggaaga agttttaatc caaatagaca ccggttgaag cacacgagca ctaagccaac
     2521 agtcacggcc gttgactcta ttgacgagga cattgaagag gttaccctca gatgactgac
     2581 tggagcacac agagtaatct cttggtaaga ataaattggt agcttcaaac ctacgtggtc
     2641 ccttcagctg gcactgtttc cccaaagtgt ctacaaactg gcagaagaga cattgcccgt
     2701 ggtatgcagt gacatgccca ctctctgtgc tggttgcctt aatcagggaa ggatggactc
     2761 tgctcttacc ctgctcagga caaggttagg aatggggaag gcgtggttcc gctgacgaag
     2821 cactttggac agttggtggc tgctggggag agtcagtttt cttcaagagt gcagccccct
     2881 ctcccccaag taggctgact caaatccagt ggttggccca acccaatatc catgagtaca
     2941 tgggtgacac aaactggagt tgatttttct taaaagatgt aaagttggga gggggtggat
     3001 ctgaggggag ttgtgtatgg gtgaaagggt gaatgtcata atattgtatg tgtgtattaa
     3061 attctcaagg aataaacact tatttaaaaa ttaa
//
