LOCUS       XM_039104448            2266 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lipopolysaccharide binding protein
            (Lbp), transcript variant X3, mRNA.
ACCESSION   XM_039104448
VERSION     XM_039104448.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104448.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2266
                     /gene="Lbp"
                     /gene_synonym="Bpifd2"
                     /note="lipopolysaccharide binding protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 61 ESTs, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 58 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:29469"
                     /db_xref="RGD:61865"
     CDS             1028..1876
                     /gene="Lbp"
                     /gene_synonym="Bpifd2"
                     /codon_start=1
                     /product="lipopolysaccharide-binding protein isoform X3"
                     /protein_id="XP_038960376.1"
                     /db_xref="GeneID:29469"
                     /db_xref="RGD:61865"
                     /translation="MIQKSVTSDLQPYLQTLPVTADIDTILGIDYSLVAAPQAKAQTL
                     DVMFKGEIFNRNHRSPVTTPTPTMSLPEDSKQMVYFAISDQAFNIATRVYHQAGYLNF
                     TITDDMLPPDSNIRLNTKAFRPFTPLITRKYPDMNLELLGTVVSAPLLNVSPGNLSLA
                     PQMEIEGFVILPSSARESVFRLGVVTNVFVSLTFDNSKVTGMLHPEKAQVRLIESKVG
                     MFNVNLFQAFLNYYLLNSLYPDVNDELAKGFPLPLPRRIKLHDLDFQIHKNFLYLGAN
                     VQYMRV"
ORIGIN      
        1 agagactcag agaagtgtta caagttagcc ggtgtgctgt ctggttagag cagggtggga
       61 accttcctag cagtggggcc ccttgggtca aaagcctttg aagagctgag tgccttggaa
      121 tcgttgaaga tctagcttgg cccctgcgct ctctctctct ctctctctct ctctctctct
      181 ctctctctct ctctctctga gttttcagac atctccttcc tgtaagctct catctgtggc
      241 tgctgcagga cttgctcttc ttccctgctt agggtagaat tgcactttcc aaaccttcgg
      301 ggataggaag gcatactctg gaagacatgt taacatgtaa gaagcgcttg gcgggggttg
      361 gggatttagc tcagcggtaa aggccctggg ttcagtcccc agctccgaag gaaaaaaaaa
      421 aaagaagcgc ttgacctctg gtctttcgaa caagcagaac acagagacgc ggaggtcgca
      481 gagcggtggg tactggtgag gatttaaatg cagaggactt tctcctcctt gcagccccct
      541 tagacatcat gcttccatgc ctccagaagg cgctgttaag catctgggac caaggatgct
      601 atgtttcccc tccataacta tttaggtctc tgaaagaata gagcactcag tctcaggatt
      661 ttgggggttt gatgggatgt ttattgtctt tccaacgaag gaacaaccct aggtggggct
      721 gagagcctct ctgagcgtcc cagctgtatt cccccatctc ccagactatc accccttcct
      781 tttgctctgt ggcacctcac agatgacttc actcccagct gcaaagagaa tctcagctat
      841 tacccttgac tgccccgccc tcatggcctt ccccactgcc taccccctga ctgacagcat
      901 tttagaaccg cttggcctga agcctgcgtt agatgtgtct atcctcttct gagaagccac
      961 ctccgaccga ccatagctcc agggcaaagc ttctgtgtca cgctctttca ctgcacagat
     1021 ttgtgagatg atccagaagt ctgtgacctc tgatctgcag ccttatctcc aaactctgcc
     1081 agtcacagcg gatatcgaca ctatcctggg cattgactac agtttggtgg cggctcccca
     1141 agcaaaggcc cagacgctgg atgtgatgtt taagggtgaa atttttaatc ggaatcaccg
     1201 ctccccagtc actaccccca ccccgaccat gagcctacct gaggacagta aacaaatggt
     1261 ctactttgcc atctcagatc aggccttcaa catagccacc cgggtttacc accaggccgg
     1321 gtacctgaac tttaccatca cagatgacat gttaccgcct gactccaaca tccggctgaa
     1381 caccaaggcc ttccgcccct tcactcctct gataaccaga aagtaccccg acatgaactt
     1441 ggagcttctt ggaacagtgg tctctgcccc acttctgaat gtcagtcctg ggaatctgtc
     1501 cttggcccca cagatggaga ttgaaggctt tgtgatcctg cccagctccg cccgcgaatc
     1561 tgtcttccgg cttggcgtgg tcacgaatgt attcgtctca ttaacttttg acaacagcaa
     1621 ggtcaccggg atgctgcatc cagagaaggc gcaagtgaga ctgatcgaat ccaaagtcgg
     1681 catgttcaat gtgaacctgt tccaggcatt cctcaactac taccttctca acagcctcta
     1741 ccctgatgtc aacgatgagc tggccaaggg cttccccctc cctctaccaa ggcgtattaa
     1801 gctccacgac ctcgacttcc agatccacaa gaacttccta tacttgggtg ccaatgtcca
     1861 gtacatgaga gtctgaggac aagaagaaag atgggcctca gaggccacag cgggacctgc
     1921 catttgtaat tccagatgcg tagcacatct ccagagagtc tcaaaataca aagaagtttc
     1981 tgttcctggc tctggtggat cctgtcccca cagtcctctt caccaggtgc accctcagcc
     2041 tggacttgac tctgacctct ccagggagaa gccctcccct caccaacctc tccagggaga
     2101 gcccctcccc ccaccaacct ctccagggag acccctctcc caccactgac ctggaatcac
     2161 ttaaagagca ggcactgtgg ttttgagtgc accttctcac cttcatgtct gacggagtgc
     2221 tggcacttag taggtcctca ataaatattt atagaatgac atgaca
//
