LOCUS       NM_001191997            1162 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus layilin (Layn), mRNA.
ACCESSION   NM_001191997 XM_576410
VERSION     NM_001191997.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Kuo,J.C., Han,X., Hsiao,C.T., Yates,J.R. 3rd and Waterman,C.M.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   2  (bases 1 to 1162)
  AUTHORS   Bono,P., Rubin,K., Higgins,J.M. and Hynes,R.O.
  TITLE     Layilin, a novel integral membrane protein, is a hyaluronan
            receptor
  JOURNAL   Mol Biol Cell 12 (4), 891-900 (2001)
   PUBMED   11294894
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            [WARNING] On Mar 14, 2025 this sequence was replaced by
            NM_001191997.2.
            
            On Jul 17, 2010 this sequence version replaced XM_576410.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN12840108, SAMN12840111
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                JAXUCZ010000008.1  60280529-60280617   c
            90-106              JAXUCZ010000008.1  60279934-60279950   c
            107-404             JAXUCZ010000008.1  60277553-60277850   c
            405-562             JAXUCZ010000008.1  60271374-60271531   c
            563-598             JAXUCZ010000008.1  60267495-60267530   c
            599-670             JAXUCZ010000008.1  60266449-60266520   c
            671-770             JAXUCZ010000008.1  60265595-60265694   c
            771-1162            JAXUCZ010000008.1  60263456-60263847   c
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..1162
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /note="layilin"
                     /db_xref="GeneID:500996"
                     /db_xref="RGD:1564444"
     CDS             1..1131
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /codon_start=1
                     /product="layilin precursor"
                     /protein_id="NP_001178926.1"
                     /db_xref="GeneID:500996"
                     /db_xref="RGD:1564444"
                     /translation="MQPGAALQAMLLAVLLAKPRDSKGHLLSGDLDPRGGQRFCWEGT
                     RRPCYRVIYFHDTSQRRNFEEAKEACMKDGGQLASIETADEQRLIENFIESLQASDGD
                     FWIGLKRLEEKQHNSTACQDLYAWTDGSLSQFRNWYMDEPSCESEVCVVMYHQPSAPP
                     GIGGPYMFQWNDDRCNTKKNFICKYSDDKPSTTPSLSPGGEATEPAAPILPEETLEID
                     TKERREAALNLAYILIPSIPLFLLLVVTSAVCWVWICRRKREQTDPPTKEQHTIWPTP
                     HQENSPDLEVYNVIRKQSEADLAEPRPDLKNISFRVCSGEAMPDDTSCDYDNMVINPS
                     ESGLVTLASMEGRFVTNDIYEFSPDRMGRSKESGWVENEIYY"
     exon            1..89
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
     exon            90..106
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
     exon            107..404
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
     exon            405..562
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
     exon            563..598
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
     exon            599..670
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
     exon            671..770
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
     exon            771..1162
                     /gene="Layn"
                     /gene_synonym="RGD1564444"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgcaacccg gagcagcgct gcaggccatg ttgctggcgg tgctgctggc caaaccgagg
       61 gattcgaagg gtcacctgct gagcggtgac ttggacccca gaggagggca gcggttctgc
      121 tgggaaggga cacggaggcc ttgctacaga gtcatttatt tccatgacac ctctcaaaga
      181 cggaactttg aggaagcgaa agaagcctgc atgaaggatg gaggacagct agccagcata
      241 gaaacggcag atgagcagag gctgatagag aacttcattg aaagcctcca ggcatctgat
      301 ggtgatttct ggattggcct caagaggttg gaggagaaac agcacaacag cacagcctgc
      361 caggaccttt acgcttggac agatggaagc ctgtcacagt tcaggaactg gtatatggat
      421 gagccttcct gtgagagcga ggtctgcgtg gtcatgtacc atcagccatc agcacctccg
      481 ggcatcgggg gcccatatat gttccagtgg aatgacgacc ggtgcaacac gaagaagaat
      541 ttcatttgca aatattctga cgataaacca agtacaacac cctctcttag tcctggaggt
      601 gaagcaactg agccagcagc acccatactt ccagaagaaa ctctggaaat agacaccaaa
      661 gaacgcagag aggctgcttt gaatcttgcc tacatcctaa ttcccagtat tccccttttc
      721 ctcctacttg tggtcacttc agctgtgtgt tgggtttgga tctgtagaag aaaacgggaa
      781 cagacagacc ctcccacaaa ggagcagcac accatttggc ccactcctca ccaagagaac
      841 agccctgacc tagaagttta caatgtcatc agaaaacaaa gtgaagctga tttagccgag
      901 ccccggccag atctgaagaa catctccttc cgggtgtgtt ctggggaagc catgcccgat
      961 gacacgtctt gtgactatga caacatggtt ataaaccctt ctgaaagtgg gttagtgact
     1021 ttggcaagta tggagggtag atttgtgacc aatgacatct atgaattctc ccccgacaga
     1081 atggggagga gcaaggagag tggatgggta gaaaatgaaa tatattacta agacatatga
     1141 aaaaaccagc aagaatgtaa aa
//
