LOCUS       XM_039080365            6342 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus La ribonucleoprotein 4 (Larp4),
            transcript variant X1, mRNA.
ACCESSION   XM_039080365
VERSION     XM_039080365.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080365.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6342
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6342
                     /gene="Larp4"
                     /note="La ribonucleoprotein 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 61
                     ESTs, 12 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 197 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100910299"
                     /db_xref="RGD:6499275"
     CDS             142..2313
                     /gene="Larp4"
                     /codon_start=1
                     /product="la-related protein 4 isoform X1"
                     /protein_id="XP_038936293.1"
                     /db_xref="GeneID:100910299"
                     /db_xref="RGD:6499275"
                     /translation="MLLFVEQVTSKGTGLNPNAKVWQEIPSGNPDGTPVTETSWHETA
                     ATSGSHPEGNTELSEEMCKEYEVMYSPSCEPTRNTADIEESADGMILGPEDLSYQLYD
                     VSGESSSTISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEI
                     KKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKN
                     ENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFA
                     KNGYRLMDSSMYTQPIQTPTQYPSPVFMQPVYNPHQQYSVYSIVPQSWSPSPAPYFET
                     PLAPFPNGSFVNGFSSPGSYKTNAAAMNMGRPFQKNRVKPHFRSSSGSEHSTDGSVSL
                     GDGPVSRSSSRIFLSERHNPTVTGHQEQTYLPKDAPILQMEQNGDFGRGRRTLFRGRR
                     RREDDRIPRPQPAATEAKAPAPKFDLLATNFPPLPGSSSRMPDELALENRMSDVVKGV
                     CKEKDNEDLRVSCPVPAEDGQTDCASVPQLSISPSPPCTAEPPALSSTTQQEKDQMED
                     SAAPKDVLNPVPVPVSSPTTTKPSRANTASPCNSTVNTPIAVAPQEPRKLSYAEVCQK
                     PPKEPSPVLVQPLRELRSNVVSPTRNEENGAPEKPVEKPQEKPETRASKDHSGFRGNT
                     IPRGAAGKIREQRRQFSHRAAPQGVTRRNGKEQYVPPRSPK"
ORIGIN      
        1 cggctgacgg cgggggagga gccgggtcca ctgccgggtg gaggggcaag gcgagtgtcc
       61 ttatcctacc gattggggcc cgggcctgtg agccagttgg agtcgcggca gcgtgaacga
      121 tcgggccgag cggaagcaga catgttgctc ttcgttgagc aggtgacatc taaaggcact
      181 ggtttaaatc ctaatgccaa agtatggcaa gaaattcctt ctggaaatcc agatggcact
      241 cctgtaactg aaacatcttg gcatgaaact gcagccacat ctggatctca ccccgagggc
      301 aatacagaac tttcagagga aatgtgtaag gaatatgaag tgatgtattc tccatcttgt
      361 gaacccacaa gaaataccgc agacattgaa gaatcagctg atggaatgat cttaggacct
      421 gaagacctga gttaccaact atacgatgtt tctggagaaa gcagttcaac aatttctaca
      481 gaagatttaa aagaatgtct gaaaaaacaa ttggaattct gtttctcacg agaaaactta
      541 tcaaaggacc tgtacttgat atctcaaatg gatagtgatc agttcatccc aatatggaca
      601 gttgccaaca tggaagaaat aaaaaaattg actactgatc cagacttaat tcttgaagta
      661 ttgagatctt cccctatggt acaagttgat gagaagggag aaaaggtgag accaagtcat
      721 aagcgctgta ttgtgattct cagagaaatt cctgagacga cacctgtaga ggaagtgaaa
      781 gctttgttta aaaatgaaaa ctgccccaaa gtgataagct gtgagtttgc acacaacagc
      841 aactggtata tcactttcca gtcagacaca gatgcacagc aggcttttaa atacttacga
      901 gaagaagtta aaacgtttca gggcaagcca atcatggcaa ggataaaagc catcaataca
      961 ttttttgcta agaatggtta tcgattaatg gattctagta tgtatactca acccattcag
     1021 actccaaccc agtatccctc gccagtcttc atgcagccag tgtacaatcc acatcagcag
     1081 tactcagtgt atagtattgt gccccagtct tggtctccaa gtcctgcacc gtactttgaa
     1141 acaccactgg ctccctttcc caatggtagc tttgtgaatg gctttagttc accgggatct
     1201 tataaaacaa atgctgctgc tatgaatatg ggccgaccat tccaaaaaaa tcgtgtgaag
     1261 cctcatttta ggtcatctag tggttcagaa cactcaacag atggatctgt gtcattgggg
     1321 gatggaccgg tgagcagatc cagttcaagg atctttcttt ctgaacggca taacccaaca
     1381 gtaacagggc atcaggaaca gacttatctt ccaaaggatg ctcccatttt acagatggaa
     1441 cagaatgggg actttggaag aggcaggaga actctcttta gaggtcgaag acgaagagaa
     1501 gatgacagga tcccaagacc ccagcctgca gcaactgaag caaaggctcc agcaccaaag
     1561 tttgacttac ttgctacaaa tttccctcct ctacccggaa gctcatcaag aatgccagat
     1621 gaactcgctt tggagaacag aatgtctgat gttgttaaag gtgtctgcaa agaaaaggac
     1681 aatgaggact tgagagttag ttgcccggtg cctgcagaag acggacagac agactgcgct
     1741 tctgtgccac aactcagcat aagtcctagt cctccatgta cagctgagcc tcctgcatta
     1801 agcagcacaa ctcagcagga gaaggatcaa atggaggatt ccgctgctcc aaaagatgtt
     1861 ctcaatccag tgccagtgcc agtgtcttct ccaactacta caaagccatc aagggcaaac
     1921 actgcttcac cttgcaatag taccgtaaat acacctatag ctgtggcccc acaggaacct
     1981 cgaaagttaa gctatgctga agtgtgccag aagcctccta aggagccgtc tccggttctt
     2041 gtccagccac tgagggagct tcggtccaat gtagtgtctc ccaccagaaa cgaagagaac
     2101 ggagctcctg agaagcctgt tgagaagcca caggagaaac cggaaacaag ggctagtaag
     2161 gatcattctg gcttccgagg caacaccatt ccccggggag cagctggaaa aatcagggaa
     2221 cagagacgcc agttcagcca tagggctgca cctcagggag tgactcgacg gaatgggaag
     2281 gagcagtacg tgccacccag atcaccaaag taaaaacagc tctaacaaaa actactcaga
     2341 aacttctctt cccactaaac ttgagccgct gttgaactgt tttgagggga ggaagtagcc
     2401 aggaaagaat gggaagtatg tccccaaata ttacggattt tggaattgtg agtaggaaga
     2461 gcccaaaatt catctctaaa tgattttcaa atgctggagg attccaatca gtataaatat
     2521 atataaatat atatatatac acacatatat ataaatataa tttttctatt tttgtttttg
     2581 attttaattt gcagggattt tctgcctgga atcaattttg agggttcaga tttagcttgg
     2641 gagagaaaac aaaaaacatt atacatcctt cagtatagga gatgagggag tgagagaaaa
     2701 tattttttga agaaacattt ctgtaaaaat tagaaattac tttttttaat ctatttaaag
     2761 tttggcttga aggatgctct tctgactaca tggccttgtg ttgcagagca gatgagtggc
     2821 tgggggtctg ttctgggtct gagtgtgcac aagtgattga cgccaaatct gttgtcacgt
     2881 agaaaatgat ttcaaagctg aatgtaatac ttgagtcgat tttctttgta gtttggaatt
     2941 tagttttttg tttttttttt tgttttgttt ttttgttttt gttttgacat tactaatact
     3001 gtattgtatg agcaagctgt tgagctctga ttgtgtatga agctgtgact accaatcagt
     3061 ttgatattca aggaaagcat ggagattatt caagaaaaaa aattgaaaat tctgttttag
     3121 acctgaatac tggataggtc aaaaagattt cagaggttca aactgccctg tgactttttt
     3181 cctttttaaa aatttttctt gtttgttagt ctctgttgtt aagactgtct acccccaaaa
     3241 gcagaataac catttactga actgtgtgtt tcttactact ttgaccggtt taatcaaatc
     3301 atataactat tctaagctgc ataatggaat attgaaagat tttactcaga aattaaagtc
     3361 ccaggatggt actgacctgc cagtaattta aagaatgaga tagtgcttct cgatgtgggg
     3421 gtgaaaatct ccaactctgg cctccagagg caggcgcggc aggtgggtct cggctctcgt
     3481 ccatccagga ctctacctct ctctagtgtc tgtctaagaa aagaaagatg aaaccgttaa
     3541 ctgtcttaaa tggtataaaa gaaaaactca aacattcatt tggggaattt gtttacaata
     3601 tttatcattt ttcttttact tacccccaag tacagtttag aattcacaga cgaaaaggat
     3661 tttttgagat aaagtgaaaa gtggttgaag aaaataaatg cataatttct cggtgaataa
     3721 agttgtagct gtcatacatt aaataggtaa agttacatgc tggtatctag aaaacagctc
     3781 aaatatgaaa aaaccatgtt gcattaatct gttttaagtc agatcatttt tacagtttta
     3841 tgtagggtgg tggtttattt tacttcttag ggatagttta caatagtaac aactgtccct
     3901 tacattagtg agttacgtat gtacaaattg aaactgtaaa ttgtgaacac tggaaaagca
     3961 ccattgtgac ataaacatcg tagtaatata tttaaaatga atgtaaatgg aagttaaatt
     4021 acattactgt gaagcttcac cttccacctc tgaagtgtct gagatttgtg ttcgtgggta
     4081 attcctaaga gctttggaaa cactgcacag tccgtgtaac ccaagttatt atttctttgt
     4141 aacttattac tcagcttggc gagcgctttt gatttgatgg attgataaca tggtataata
     4201 tatttactta gttggaaaca attatttcta catacttttt tttttctaaa tatctgctag
     4261 atgaaacata caataaaact acctgtacta acatttggga gagctttaga aagtattaat
     4321 aattgtcagc tacatctatg ataaaagtgt ttattctggg ttacttagaa atgataaaca
     4381 tttaaagtgt taacatctta tgaatgcagt ggatcaatag aataaacatt ttgcaaaaaa
     4441 tcacttgata aggattataa actttatttt tgcacttaaa atgaaaaata ctgttttgtt
     4501 ttctctaagt gtgtcacaga tgtagtttcc aacttcttgc tggtttgtgt ggcttaccag
     4561 taatccatta cttcaggttg gtttttgtac agtgctgccc ttgaacccag ggccttgcag
     4621 agaccccatg agtgtcatag cactgagctg tccctccaac tcctaaaggt ctggttgaaa
     4681 ttcaagaaaa atttcctctt aaagcaagta tattcttggg tgttttttct ccaaatactg
     4741 agtgtagcaa ttttttaaag cataggattt ttatttcagt ttccctcagt atttgtaagt
     4801 agctccattt gaatgggggt gtgcggggag ggtaatgagt atgaatgtgt gctatgtatt
     4861 ctcagtgtgt atttgacagt tacttcactg cagcgtgtgt aaatgatgcc tgtgagtcct
     4921 gtgagacgtc agagtttatt ctcacctcat ggcttgcatt attgaaggcc acacgtagat
     4981 gagatgatgc tgatgtgccc cacagtagtg ccccacagtt cccactgcat ggagagcaca
     5041 gttcacacaa gctcatcacg gcgcacttca gagagaaggt gcttagaggg gctggcatgg
     5101 caaaaccttc tccttctgtc ttctgtcttg atatctaatc tttaatctga ataatctcag
     5161 ttttgccaat actcagtggc gttgaaaaga tctgtctaca ttcttccccg cctgtgttgg
     5221 agacggatga aaccttccaa tgacaggggt ttgttgtcct acctgcatat ctttcataca
     5281 atcaaatgtt atgcagaatt ttaatttatt tttagttcct aaagttaagg tagcttcaat
     5341 attatttcac attccttttt ctttttaaat aaccagattt gctttgcaaa gacttagggg
     5401 cggaattaag ttagtatctt tcacttaggg taaagaggac aagaaaatat tatttaagag
     5461 ttaggagcac tttgtctagt tttgttagtt atgtatggcc ttaataatca gtctcttggc
     5521 ttaaatgttc actggttttg ctttgacaca gttgaacagc actggggttc agttcctgat
     5581 gcttgtgttg gcaatatata ttaaccatat tttaagagta tcattctggc tttttatgga
     5641 aaagataaaa atcaaacagt atattccttt gagggttttt ttaatacgta aatatatata
     5701 aatataatat atgatggatt ttttctaatt ttttatattt ccttacaatt tggtggctat
     5761 tattctaact actctttggc atatactaag tagctagtct gggctttcaa gaatatgcat
     5821 gggcatttca gtttttatta gctgaatgag gacattttga attctcttaa gtcacctgat
     5881 tattaaataa caatgtttat ttttaaaact aacaatttgt tgtgtcttat tacacattac
     5941 acagtcctaa aggtgcggct ctgatgtctg caagctgtgg gccaagtatt ctgttatcag
     6001 ttctatagca cagaacactg actagaaatg taaagagata cccacaccaa tgttctgtta
     6061 ctgtttttcc aatgattcag gtgtccattg agtgacgtaa cttaaatgtt gggggagtgg
     6121 cgtgtcagaa ccagttatct ggcttctgtt ttgtccatag cttagatttg ttctgttgtc
     6181 aaaactgtcc cctgccctcc cctcccgtaa caatggtgtg acacatactc atgcataaac
     6241 tgttaaatga gcatctttgt atttgtattg ttttcaacat tgccaaggtg ctatgagaaa
     6301 ttaaaattac aaaattagaa aaaataaaat tattgaaaaa ca
//
