LOCUS       NM_001415051            4451 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus La ribonucleoprotein 1B (Larp1b), transcript
            variant 1, mRNA.
ACCESSION   NM_001415051 XM_039102243
VERSION     NM_001415051.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4451)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4451)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Dec 20, 2022 this sequence version replaced XM_039102243.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.3188516.1,
                                           SRR26643293.11943.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-837               JAXUCZ010000002.1  125863997-125864833
            838-896             JAXUCZ010000002.1  125875848-125875906
            897-956             JAXUCZ010000002.1  125876404-125876463
            957-1131            JAXUCZ010000002.1  125878221-125878395
            1132-1272           JAXUCZ010000002.1  125883162-125883302
            1273-1416           JAXUCZ010000002.1  125885687-125885830
            1417-1582           JAXUCZ010000002.1  125886253-125886418
            1583-1727           JAXUCZ010000002.1  125889847-125889991
            1728-1902           JAXUCZ010000002.1  125893948-125894122
            1903-4451           JAXUCZ010000002.1  125894641-125897189
FEATURES             Location/Qualifiers
     source          1..4451
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q26"
     gene            1..4451
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /note="La ribonucleoprotein 1B"
                     /db_xref="GeneID:310348"
                     /db_xref="RGD:1307509"
     exon            1..837
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     CDS             309..1922
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /note="isoform 1 is encoded by transcript variant 1;
                     la-related protein 1B; La ribonucleoprotein domain family,
                     member 1B"
                     /codon_start=1
                     /product="la-related protein 1B isoform 1"
                     /protein_id="NP_001401980.1"
                     /db_xref="GeneID:310348"
                     /db_xref="RGD:1307509"
                     /translation="MSARAPVPAAAPREDPPAVAGDRDALLAAASRRAEQPAPGEREG
                     KEAREERAAAATSAGARGEPSPALVLGHSVPQAAVPVRPLALHLAHKARAPGGPFGGE
                     APPPPPPPPPPPPPPPPPAPRDPPEDVREDPAAAGLEDKPPPLPKGNPWTKKLPQHLS
                     PVGTGVPPPAQDSPEAELSSPKIIKAGKLKTKKSNKASDFSDMANWPTPGELVNTGSQ
                     SVISQGNKKPQIRKEKEEKIEKRSNSESKENREAKLDGPIENVSEDEAQSSSQRKRAN
                     KHKWVPLHLDDVRPDSQERPGSRNSSRCQPEANKPAHNNRKSDTRSWRRDREKRDDQD
                     EVSSVRSEGGTIRGSTRGRGRGRGRGRGRGRGNPRLNFDYSYGYREPGERTEQPFPTE
                     LNTSMMYYYDDGTGVQVYPVEETLLKEYIKRQIEYYFSIENLERDFFLRRKMDEQGFL
                     PISLIAGFHRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRNVP
                     QTDFSQLIDCPEFIPGQAFGSHTVRVMIY"
     exon            838..896
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            897..956
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1131
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1272
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1416
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            1417..1582
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..1727
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            1728..1902
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
     exon            1903..4451
                     /gene="Larp1b"
                     /gene_synonym="RGD1307509"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagatcctt cagactggct ggagcgccgc gtcgtcgccc gcgcccgctg agggctcgcg
       61 gctcgggcgc gcccggcgcg tgtggcgagc tccagccgtg cgctgcgacg aggccgggcg
      121 gcgggcggtt agcgctccgc tcggcgggcg gggaggacgg gcacgccggg cgctgcacgc
      181 ctcggcgggc aggttccgcg tcccaggacc gaagcgggtc ggtgcccccg tgtggagaga
      241 ggggcggccg ggctccctgg acccggacgg ccccaggctg ggcaggaggc tggggccagg
      301 ggccggccat gtccgctcgc gccccggtgc ccgccgctgc cccccgggag gacccgcccg
      361 ccgtggccgg agaccgggac gcgctgttgg cagcggcgag ccggcgggcg gagcagccgg
      421 cgcccggcga gcgggagggc aaagaggcga gggaggagcg ggccgcggcc gccaccagcg
      481 cgggggcgcg gggagagccg tcgccggcgc tcgtgctggg acacagcgtg ccgcaagcgg
      541 ccgtgcccgt gaggccgctg gcgctgcacc tggcgcacaa ggcgcgtgcg cccgggggtc
      601 ccttcggcgg ggaggccccg ccgccgccgc cgccaccacc accgccgccg ccaccgccgc
      661 cgccgccagc acctcgggac ccaccggagg acgtccgtga ggacccagcg gcagccggcc
      721 tcgaggacaa gccgccgccg ctgccaaagg ggaacccgtg gaccaagaag ctgcctcagc
      781 acctgtcccc ggtgggcacc ggcgtgccgc cgcccgctca ggactccccg gaggccgagc
      841 tcagttcccc caaaattata aaagcgggaa aactcaagac aaagaaatcc aacaaggcta
      901 gtgacttcag tgatatggca aactggccaa caccaggtga attggttaac acggggtctc
      961 agagtgttat cagccaagga aataaaaagc cacaaattag aaaagaaaaa gaagagaaga
     1021 ttgaaaaaag aagcaacagt gagagcaaag agaaccggga agcaaaacta gatggtccta
     1081 ttgaaaacgt cagcgaggat gaagctcagt caagcagcca gcggaagaga gctaataagc
     1141 acaaatgggt accactccac ttagatgatg tgagaccaga cagccaggaa agacctgggt
     1201 cccggaacag ctctagatgt caacctgaag caaataaacc agcgcacaac aatagaaaaa
     1261 gtgatacacg aagttggaga cgggatagag aaaagagaga tgatcaagat gaagtatcca
     1321 gtgtgagaag tgagggtggt accatccgag gttccactag aggccgggga agaggccggg
     1381 gccgaggaag aggccgaggt cgaggaaacc ctagattgaa ctttgattat tcatatggtt
     1441 atcgagagcc aggggaaagg actgagcagc catttcctac agagcttaac accagcatga
     1501 tgtattacta tgatgatggc acaggtgtgc aggtgtatcc tgtggaagaa acactgctta
     1561 aagagtacat taagcgccaa attgagtatt acttcagcat agagaacttg gaacgggact
     1621 tctttcttcg aagaaagatg gatgagcagg gatttctgcc catttccctg attgctggtt
     1681 ttcaccgtgt gcaggctctc accacaaacc ttaatctcat cttggaggca cttaaggata
     1741 gcacagaagt agaaattgtg gatgagaaaa tgaggaaaaa gatagaacca gaaaaatggc
     1801 caattccagg ccctcctcca cgaaatgtgc cacagacaga cttctctcag ttgattgatt
     1861 gtccggagtt catacctggc caggcctttg gctcccatac agtcagggtg atgatctact
     1921 gatgctcttg gatgtcatgt gatcggaata tacagtggag taggtgactc cctgaaatac
     1981 catgtaaata tgagagcaaa tcgtgctgca gaagtgagag tgaccatact gtcttctgtg
     2041 caagaatgtc tacgcccacc cccttgtgga gaaggttggg ccagcctgca gtggagaaaa
     2101 ccacctttac gataatgatg tgagacagac cagaggactg ctgttactgt aggagcttct
     2161 cctttctatg tcattagctt aggctgcacg ggctacttca tggtgggaaa gttaattgtt
     2221 atcattgggg aaatactgca aattctatct tttgtttcca ggcatttata ctttgcccag
     2281 atcaataaag cagaaaaaga gaggattgag tagcatttcc aaaattgtta ggtcctttgc
     2341 tatttgactt gctctttaat atagtatact ttgcataact cacatgttgt catatttcac
     2401 atgtactata agatgtatta atgtgaatac ttaaggggta agaaatttaa gttaaataaa
     2461 taagggcatt tttcctttat gcttcaaaat tgttttaaag ggcttttctt tttattattt
     2521 tatttattat tgtgcacata tgtgtgtttt ttgcgtgtgg gcatatgtgt gccatggtat
     2581 gtatgtgtgg aggtaagagg acaactttac agagttggtt ctttatttcc actgtgggac
     2641 tcaggtatta aactcaggtg gttagatttg cccagtaagt gcccttacct tctgagccat
     2701 gtctctggct tcaaaattgt atctcataca ttggcataaa aaaactgcct gcctatctat
     2761 gttcctcaaa ctgtaaactg gaataaatcc ttcttgtcaa gaatttgggc acagcaatga
     2821 aaaaaataac taataaagtt agtaccaaga agtcgaagtg ttgctgtagt aacctatgtg
     2881 gtatgtaggc tgttggacct ggtcctcaga aggaatgtga aagaaggatg cagagctcag
     2941 tagtcattct gagtggctta taggagacca gcacaccaat gagaacctag caagtgacca
     3001 ttgtgctcag gagaggggca ggtaacactg gagagttgag ctaaaggcta tttgtgtttc
     3061 ctactgatgg agaatatgga tgtattctgc ccattcctga gaatgtaagt catagagcga
     3121 tttgcagttt gtttggcagt ggcagtttca aaacagaatt atgtttaggc aaaggcatat
     3181 ttactactca ctgtgcttat tcagatctat agcaagagaa agcagagagt gaaaaatgtt
     3241 cagtgtgggg aagaaaggag tgcacccagc agagtgcaca gagagctttt tatacttaag
     3301 gaaattagtg ccaaagtgag aaattaaaca ttactactaa ggcagggcaa gtgcccgtag
     3361 tctcaaattg atttgaaaga agagaaacta aactgagact ggctaatttc tgctatgtaa
     3421 acagacttct atgagaaatg tttaacaggt ttggaagccc aagtatgttg aaaggctagt
     3481 tatagcactc ttaagctact tacaggtaat aggggccaga cagcatctca ggctggcagt
     3541 agaacttgaa tgcttcatca gcatgtaaaa tgcaagttac agggtcatgg aagcttgcat
     3601 cagaagccac tgaaaaactg tgtggcaaag gagattctga aacaccattg tttaaagctc
     3661 tgtaaggtca agttgtaaac tagacatcca ggctatttat tggaagttcc agaattgtgg
     3721 aacacctgcc aatggaaact gtagtagaat catcccatga gagaagctat atatatagta
     3781 caggtgacaa cattggaggg gtgttgctgt ccatggtttt tggatcccag atgatagtac
     3841 cacaagcccc agatgctgat catggtatag tgtttccctg ctaggtttag gtgttacttt
     3901 gatccaatct tcccttgcta taccccattc ctctctgttg gaatggaaat gtttacacta
     3961 tgcctttgta cattggaagt atgtatcttg ttttctgaaa ttatagaaac tcacgttaag
     4021 accttgcctt gcatctcaga gcctttgggc ttttgaacaa tgttgggaca attaaagact
     4081 atggtgactt ttgaagtcag actgaattta ttttgcttta tgaggctatg ggagtcagag
     4141 atgaaatgta atggtttaaa gtgatttgtt tgagagtcaa gttgacaagg agtgtacttg
     4201 tgataattaa tcttcattgt taactttgct ggttatgtct gtgggggcat ttccagagag
     4261 gcttaactga agagggaaga cccatcctaa actgggctgg gtgcttggcc tgaataccag
     4321 cattcatctt tgtgcttcct gactgcagac acagtgtttc cagccacctc atgttcctat
     4381 ctccatgcct tcctgccatc atggattctg cccctcaaac tgtgagccaa aataaatcct
     4441 tctaccctta a
//
