LOCUS       XM_039087205            6823 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus La ribonucleoprotein 1, translational
            regulator (Larp1), transcript variant X1, mRNA.
ACCESSION   XM_039087205
VERSION     XM_039087205.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427639.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6823
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6823
                     /gene="Larp1"
                     /note="La ribonucleoprotein 1, translational regulator;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 98 ESTs, 4 long SRA reads, 12 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 238 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:303158"
                     /db_xref="RGD:1306683"
     CDS             282..3503
                     /gene="Larp1"
                     /codon_start=1
                     /product="la-related protein 1 isoform X1"
                     /protein_id="XP_038943133.1"
                     /db_xref="GeneID:303158"
                     /db_xref="RGD:1306683"
                     /translation="MATQVEPLLPAGAALLQADEHGLARKKPAPDTQAESGPGDGGGE
                     PDGGVRRPRPACARPGRDGTERESPRPPAAAEAPAGSDGEDGGRRDFVEAPPPKVNPW
                     TKHAPPPPSAVNGQPPPEPSAPAKVVRAAAPKQRKGSKVGDFGDAINWPTPGEIAHKS
                     VQPQSHKPQPARKLPPKKDMKEQEKGDGSDSKESPKTKSDESGEEKNGDEDCQRGGQK
                     KKGNKHKWVPLQIDMKPEVPREKLASRPTRPQEPRHTPAIRGEIKGSEPATYMPVSVA
                     PPTPAWQPETKPEPAWHDQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTH
                     FDYQFGYRKFDGTEGSRTPKYMNNITYYFDNVSSTEIYSVDQELLKDYIKRQIEYYFS
                     VDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALKDSKVVEMVEEKV
                     RRREEPEKWPLPGPPIVDYSQTDFSQLLNCPEFVPRQHYQKETESAPGSPRAVTPVPT
                     KTEEVSNLKTLPKGLSASLPDLDSESWIEVKKRPRPSPARPKKSEEPRFSHPTALPQQ
                     IPSQQLMSKDQDEQEELDFLFDEEMEQMDGRKNTFTAWSDEDSDYEIDDRDVNKILIV
                     TQTPPYMRRHPGGDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQ
                     EVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGPPRYQQVPTDALANKLFGAPEPST
                     IARSLPTTVPESPNYRNARTPRTPRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKT
                     RHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTPAVGSYGCTPQSLPKFQHPSHE
                     LLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFK
                     QLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFW
                     AFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHKRHPVVAGGSGEGRKR
                     CPSQSSSRPATGISQPPTTPTGQATREDAKWTSQHTDTLTLGK"
ORIGIN      
        1 ccgcccgccg cggatcgcgt ggtctggctc ggctctccgc gccgctcccc cccgggccgt
       61 ccgcaccact gcagcccccc gagccgcccc gggccggggg cggggggacg caggccgcgg
      121 accgaggtcc gccaggccgg ctaggcgcgc cggagctctc cgcccggcgc gccgctcagc
      181 gtccgcccgt ccgcgccgcc ccgggtccgc gcggcccggg ccccggcgcc ccgccagcgg
      241 cctcgagcgg ggcccgcggc gcgcccggcc cctccgcgca gatggccact caagtggagc
      301 cgctgctgcc cgcgggtgcc gcgctgctgc aggccgacga gcacggtctg gcgaggaaga
      361 agccggcgcc cgacacccag gccgagtcgg gcccgggtga cggcggtggt gagccggacg
      421 gcggcgtccg caggccgcgg cccgcctgcg ccaggcctgg ccgcgacggc acggagcgcg
      481 agagcccgcg gccacccgca gctgcggaag ccccagcggg gagcgacggc gaggacggcg
      541 gccggcgtga cttcgtggag gcaccgccgc ccaaggtgaa cccgtggacg aagcacgcgc
      601 cgccgccgcc gtccgcggtg aacggacagc cgcctccaga accttctgct ccggccaagg
      661 tggtgagggc agctgctccc aaacagcgta agggcagcaa ggttggtgac tttggagatg
      721 caatcaactg gcctacacct ggagaaatag cccacaaaag tgtgcagcca cagtcccaca
      781 agcctcagcc tgcccgtaag ctgccaccca agaaggacat gaaggagcag gagaaaggag
      841 atggaagtga tagtaaggag agcccaaaaa caaagtcgga tgaatcgggg gaggaaaaga
      901 atggggatga ggactgccag cgaggcgggc agaagaagaa agggaacaaa cacaagtggg
      961 ttccgttgca aatagacatg aagcctgaag tacccagaga gaaattggcc tcacgtccca
     1021 ctcgcccaca ggaaccaaga catacacctg ctatccgagg agagatcaaa ggatctgaac
     1081 ctgccaccta catgcctgta tctgtggccc cacctacccc agcctggcaa ccagagacca
     1141 aaccagagcc tgcatggcac gaccaggatg agacatcgag tgtgaagagt gatggggctg
     1201 gtggggctcg ggcttccttc cgtggccgtg gacgggggcg tggtcgtgga cggggccgtg
     1261 gacggggtgg cactcgaacc cactttgact accagtttgg ctaccgaaag tttgatggta
     1321 cagaggggtc ccgcaccccc aagtatatga acaacatcac ttactacttt gacaatgtca
     1381 gcagcactga gatttacagt gtggaccagg agctgctcaa ggattatatc aagcgccaga
     1441 ttgaatacta cttcagcgtg gacaatttag agcgagactt cttcctgaga cggaaaatgg
     1501 atgctgatgg cttccttccc atcaccctta ttgcttcctt tcaccgtgta caggccctaa
     1561 ccactgacat ttcactcatc tttgcggctc ttaaggacag caaggtggta gagatggttg
     1621 aggagaaagt ccgcaggagg gaagaacctg aaaagtggcc actgcctggg cccccaatag
     1681 tggattattc acaaactgat ttttctcagc ttctcaactg cccagaattt gttccccgcc
     1741 agcactacca gaaggagaca gagtcagcac ctggctctcc ccgtgcagtc accccagtgc
     1801 caaccaaaac agaagaggtc agcaacctga agacccttcc caagggcctg tctgccagcc
     1861 tcccagattt ggattctgag agctggattg aagtgaagaa gaggcctcgg ccctcaccag
     1921 cacgccccaa gaagtcagag gaacccaggt tctcccatcc aactgctctg cctcagcaga
     1981 ttccttccca gcagctaatg tctaaggatc aggatgagca agaagaatta gacttcctgt
     2041 ttgatgagga gatggagcag atggatgggc ggaagaatac cttcactgcc tggtctgacg
     2101 aggactctga ctatgaaatc gacgaccgag atgtcaataa gattctcatc gtcactcaaa
     2161 caccacctta tatgcgtcgg caccctggag gggaccgcac aggcaaccac acttcacgtg
     2221 ccaagatgag tgctgagctg gccaaggtca ttaatgatgg actcttctac tatgaacaag
     2281 acctatggac cgagaagttt gagcctgagt attcacagat caagcaagaa gtcgagaact
     2341 tcaagaaagt gaatatgatt agtcgggagc aatttgacac tttgacccct gagccccctg
     2401 tggatcctaa ccaggaggtt cctcctggac cacctcggta ccaacaagtt cctactgatg
     2461 ccctggccaa caagctgttt ggtgctcccg agccatccac cattgcccgt tctctaccaa
     2521 ccactgtccc agagtctcca aactaccgaa acgccaggac cccccgcaca ccccggaccc
     2581 cccagctcaa agactctagt cagacatcac ggttttaccc agtggtgaaa gaaggacgga
     2641 ccctagatgc caagatgcct cgaaaaagaa agacaaggca cagctcgaac ccccccttgg
     2701 aaagtcatgt gggctgggtg atggattctc gggagcacag gcccaggact gcttctatta
     2761 gctccagtcc atcagaggga acacctgcag tcggcagcta tggctgtacc cctcagtcac
     2821 tgcccaagtt ccagcatcct tcccatgagc tgcttaagga aaatggcttc acacaacatg
     2881 tctaccacaa gtatcggagg cgctgcctta atgagcggaa gcgcttgggc attggccagt
     2941 ctcaggagat gaacaccctc ttccgctttt ggtccttctt cctccgagat cacttcaata
     3001 aaaaaatgta tgaagagttc aagcagctgg cactggagga tgccaaagaa ggctacaggt
     3061 acggtttgga gtgccttttt cgatactaca gttacggcct agagaagaag ttccggctgg
     3121 acatattcaa ggatttccag gaggagactg tgaaggacta cgaggctggc cagctctatg
     3181 gattggagaa attctgggcc ttcttgaaat attccaaagc caaaaatttg gacattgacc
     3241 ccaaactgca agaatacctc ggcaaattcc gccgtctaga agacttccga gtggaccccc
     3301 ccatgggcga ggaaggcaac cacaagcgac acccagtagt agcaggaggc agcggagagg
     3361 gcaggaagcg gtgcccttcc cagtcttcca gcaggcctgc cactgggatc agccaacccc
     3421 ctacgacacc tactggccag gccactcgag aagatgccaa atggacaagc cagcacacgg
     3481 acacactgac tttgggaaag tgaatgacca gaagccccat ggggtttggg atagaagggg
     3541 tggggtgggt gaggatctat gggggtgccc aggctcagga gagtgaacaa gagaagggac
     3601 aggcctcgag ttattgagga taggcctttg cgctaagtag cagtgtatac aacatttggg
     3661 ctattagcgg tgctcctggg cgggagcctc cagttgctac cccttcccct gtctccatga
     3721 ccttccatca taacttctaa ggggggaggg gaagggggga gattttatat atatatatat
     3781 atatatatat atatacatat atatatatca agttttaaat tattgatagt ttgtctggat
     3841 taccaaaatc actcttcagc ccttcctgtg gctgttaggt cgacctgtct cccctgcctc
     3901 ttcccgctcc cctcaagcca actatgcagc ccaccagaag gctctggcgg ttcccatggg
     3961 ccctagaagc accagcccct tgatcacctg gggtttgcca tcaccgtgtc cctgctgttc
     4021 cacatgccct tctgccacct ctgggggaag gaaaccaaag gatctcagtg ggggttgggg
     4081 agcttcagcc tctcccccct caccccctcg ccccacccca gagatgctgc tcacaccaga
     4141 agagactatt gaaagatgat tcattttatt tttttctctg accttttcca tccttgggaa
     4201 aacagaaaac aaaaaaacaa aaaaaaaaaa aacaaacaaa aacaaaacaa aaccaaaaaa
     4261 aaaaacaaaa aaaagaaaaa gaaagataaa agaagaaaga aaaaaacaaa atcgaccact
     4321 ttttaaaaat gacaaaaaaa aaaaaatcag aacccaccta atccatagaa agtgatgtct
     4381 ttccccctcc ttggaatttt tcttctgttc tgtttttgga aataatattt ttttaaaagt
     4441 tgccttattg tggagcggga acctgaacta atgcccaaat gcctgttttc ctgagcctct
     4501 ggaagagctc cgcctgccgg ggatgtccct gggcttggac tcactagaat ttcttcggga
     4561 ctgagttgca tgtaccaggc ctcctgcctg gaggcaagag agttggggca gttttatcag
     4621 aactgtgccc agaacacccc tgctgttgca ttgtctgaag ctgatgtcct gtgtctgcac
     4681 actgtcgcca ctgttcttgt tctgctttct ttcgactcac caggcctgcc ctgctttgcc
     4741 ctgccctgtc ccaccctgcc ctgctgccct gagaacccca aggccaagtt tgcttcaaac
     4801 tgttgtaaac agaattggtc ttgcctggta cacacttgtc cacagtctgc acatctcctc
     4861 aaccccagaa caagggaatg aacacccacc agtgtccaca acttagatct gtgtctaacc
     4921 ttaaagacct ttgacctcaa ggaggtttgt gtcacaaggt ggagaaaggt accattctct
     4981 aaaggtctga tgtggtcttc cctcccatct taataccatc accccctgca agccatctct
     5041 gcccacctct cattgaccct gcctgggata gaggggtgag aggaaccaag ggctggggaa
     5101 tcctgacgtt tggtgaagcc ccatggcagg aaggtatatg tggacagagt atacctgact
     5161 tctcttcaga agccactgac tgcctgagct gcacttcaaa tgccagagga gtggctggaa
     5221 gctgctgtca ccacgagctg aggagggtga tgaaggactg agcacacagg ctggggagac
     5281 tgcatgctca ccccacactg ggacctgggc ggcacaagga ggtgtggtct tttttgctca
     5341 gttaattgaa acttgtgtga ccttcctcat cactgagttc ctcaattgtc ccaaaagttg
     5401 ggactaggac acagcaaccc agctggcaag tgtttgcctc tgccttgggt accttgtcac
     5461 ttttagctca tgccttgtcc cactctgtcc tcccggtgct tagaatgtgg gaatcccttg
     5521 ccagctcctg taagactctc ttgtcccaaa caaatatggg aacaggatct gctgctggga
     5581 tctgaggcct tctgagtttg gtacctgccc tatggtacac cttcaccaaa cagtgggctc
     5641 ccttcttccc ttccctgtct tcctttcctt tccttgctca gtcctatact gtatatcctg
     5701 taccacagaa cctcagggct cgaggcccag tgtcagggaa ggtggtttcc atctagacta
     5761 tccaggctag gtttgccatt ctctcccgga tcctcccaga ccctctgagg gaagaagccc
     5821 ctctggggtg ggaaggcaag gctatcatct caacccaggc tgaggagggg tgggagtgtg
     5881 tgtgtgtgtg tgtgtgtgtg tgtgtgtttt gtgacatgtt aaagagttga tgttgcagag
     5941 tagtttacat cctcaccttc tgaagacact tgaatttagg accgatgtat ctgtgacaag
     6001 tatgccagga gtggcggggg ccaccagagc aagccacttc cccatcacca tcttcccatg
     6061 ggatccaaga cctaagacag cctgccaaat ggaaccgcct tcatcctctg cctgtgcagg
     6121 gttggtcatc cacctgggcc cagcaaggag cagagtgttg tttgccctct gagcctcaag
     6181 agtaaatttg ctactcgaag agaaggctgc ctggccctgc tccagcctgg accccaggtt
     6241 cagacagagg tgctgagccc catgtcaagt tgttaaatgt ttttgttctg tagctccgtc
     6301 ccactccttt ttgatgatat ttacaaaaga aagcaagctg cttggaaggt ctggacgtga
     6361 gggaaagggc atgaagacaa ggctgatagt ggggagtgct agaggcttgg ttgttcccct
     6421 ggataggacc ccagagtctc tctagttaaa gggcccctag gttctcccca gctcccaccc
     6481 tctcctccag ccatggtgat ggcagaggca gaagaaaact ttgagcccag ttctcacagg
     6541 aaaggaaaac tctcatgggc tttgcagaga aggttccacc ttacgctcgt acattgtctt
     6601 taccatgttc taggatatca cattcaacag gacaaaaaaa tgtaaaatac ttgaatgagc
     6661 ttgtattata acattaatat tattgagagt gtctgcttcc caggctgaag tgattcattc
     6721 attattctgg tcctgctcta gtcctttgta attggtggta attattatgc ttttcttttt
     6781 aatacaaaaa aatgtataaa aataaaaact tgaaaaggca aaa
//
