LOCUS       NM_001191728            3773 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus LanC like family member 3 (Lancl3), mRNA.
ACCESSION   NM_001191728 XM_228739
VERSION     NM_001191728.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3773)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000021.1.
            
            On Sep 2, 2022 this sequence version replaced NM_001191728.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.60555.1,
                                           SRR26643298.31103.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-829               JAXUCZ010000021.1  16281597-16282425   c
            830-953             JAXUCZ010000021.1  16178197-16178320   c
            954-1151            JAXUCZ010000021.1  16175105-16175302   c
            1152-1359           JAXUCZ010000021.1  16167853-16168060   c
            1360-3773           JAXUCZ010000021.1  16150991-16153404   c
FEATURES             Location/Qualifiers
     source          1..3773
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..3773
                     /gene="Lancl3"
                     /gene_synonym="RGD1563642"
                     /note="LanC like family member 3"
                     /db_xref="GeneID:302540"
                     /db_xref="RGD:1563642"
     exon            1..829
                     /gene="Lancl3"
                     /gene_synonym="RGD1563642"
                     /inference="alignment:Splign:2.1.0"
     CDS             257..1519
                     /gene="Lancl3"
                     /gene_synonym="RGD1563642"
                     /note="LanC lantibiotic synthetase component C-like 3;
                     lanC-like protein 3-like; LanC like 3"
                     /codon_start=1
                     /product="lanC-like protein 3"
                     /protein_id="NP_001178657.1"
                     /db_xref="GeneID:302540"
                     /db_xref="RGD:1563642"
                     /translation="MDTKRCFANRFDDYQGSLLAGQCEEAVAPLVTSTIERILQELPP
                     LGGGAEARGATAAGSSCQGGLYSGVAGVAYMLYHVSQSPLFAAARERYLRSAKRLIDA
                     CSRAEEWGETDADTRAAFLLGGAGVYAVATLVYHALGRSDYVQPLSKFRALCAVCAPV
                     SFLECGSDELFVGRAGYLCAALVLKQKLAQEVLTPAQIKAICQAILDSGKQYALKKRK
                     PFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNW
                     PPELGETIERENELVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLK
                     KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLY
                     EGFSGTVCFLIDLLQPNQAEFPLFSVFV"
     exon            830..953
                     /gene="Lancl3"
                     /gene_synonym="RGD1563642"
                     /inference="alignment:Splign:2.1.0"
     exon            954..1151
                     /gene="Lancl3"
                     /gene_synonym="RGD1563642"
                     /inference="alignment:Splign:2.1.0"
     exon            1152..1359
                     /gene="Lancl3"
                     /gene_synonym="RGD1563642"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..3773
                     /gene="Lancl3"
                     /gene_synonym="RGD1563642"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attcccagag ctgcctggga ccactccgga gcctcgcagc agctcgttgt cccacttggc
       61 cactggctcc gcgatccctc cttttgccag cctcgtcttg tcacctcccg tctcaccctc
      121 ctcgctccat cccccgccac ctcatccaca gccatctgag cgagcgcgcc tctgagagca
      181 ggaggtactg gtcctggctg cagggcgcgc cctccaaagg tccccagctc gacattgggg
      241 tcccgcgggc gacagcatgg acaccaagcg ctgcttcgcc aaccgcttcg atgactacca
      301 gggcagcctg ctggcgggcc agtgcgagga ggcagtggcg cccttggtca cctccaccat
      361 cgaacgcatc cttcaggagc tgcccccgct gggtggcggc gctgaggctc ggggagcgac
      421 ggccgcgggc agcagctgcc aggggggtct gtacagcggt gtggctgggg tggcctacat
      481 gctctaccac gtctcgcaga gcccgctttt cgccgccgcc cgggagcgct acctgcgctc
      541 cgccaagcgc ctcatcgacg cgtgctcacg cgccgaggag tggggcgaga cggacgcgga
      601 cacccgcgcc gcctttctgc tcgggggcgc gggcgtgtac gcggtggcca cacttgtcta
      661 ccacgccctg ggccgctccg actatgtgca gcccctcagc aagttccggg ctctgtgcgc
      721 cgtctgcgct cctgtctcct tcctggagtg cggctccgac gagctgttcg tgggccgcgc
      781 tggctacctg tgcgctgcgc tcgtgctcaa gcagaagctt gcccaggagg tattgactcc
      841 agcacaaatt aaagcaatat gccaggcaat tctggactcc ggaaagcagt atgctctgaa
      901 gaagagaaaa ccattccccc tgatgtattc ttactatgga acggaatacc tgggggcagc
      961 tcatggcctg tcgtccattc tccaaatgct cctttcttac cacgagcatc tcaaaccttc
     1021 agaccgggag ctggtgtggc agagtgtgga cttcctcatg gaacaggaac agaattgcaa
     1081 ctggccacca gagctcggag agaccatcga gagagagaat gaactcgtcc actggtgcca
     1141 tggcgctcca ggaattgctt atctgtttgc caaagcttat ctcatttcca agaagccgca
     1201 gtatctggac acatgtatcc ggtgtgggga gctaacatgg cagaaaggcc tgttgaagaa
     1261 ggggccgggg atctgccacg gtgtagctgg cagtgcatat gtcttccttc ttctctaccg
     1321 tcttacagga aactcgaagt acatctaccg tgcccaaagg tttgctcagt tcttattcac
     1381 tgaagaattc aaagccggtt cacgggtcct tgaaagcata tacagcttgt atgaaggctt
     1441 ctctgggact gtttgctttc tcattgatct tctacagccc aatcaggctg aatttcctct
     1501 cttcagcgtc tttgtttaaa aggttccatc tccccttgca gtcggtggaa gtcccctgag
     1561 atttcctgag cctgctctag gccgttttcc acataatccc catctaatgg tctcacgact
     1621 gtgagccttc ccattgctgc cagatggatg agctgagtct gatgaggaca gcgtgatacc
     1681 agactgcaga gagagcctgc caaaccgaga tgctgcaact catctaaaac ccaccgatct
     1741 accgtttcag gggagagatg tcccagccaa gatcagagag aaaaggggaa aacacttaat
     1801 gtttttcagt ttgtgacaca aaaggcaaaa gtgaactgga gatgatggcg atcaaatacc
     1861 aacactttca aaactgaaca gcaaatggga tcattcgtgt gtatgcccaa tatccctaaa
     1921 ttcagaataa agacaaccac aatgtaaaag aattttgtcc tgttaagaac tctttgcagg
     1981 aatcaagtgt aaggatgaag gaaggacatg aaaagaaatc attggttgtc ctaggacttg
     2041 acttactgaa attcttaatt cttttctgag tgaagatgtg tgcatatgta tgcaaggttt
     2101 tattttaact tatgtttttg gccactattc tgaacattgt aaaaaacatc atatcataac
     2161 ttattttgaa cacggaattt tgaagctgcc ttaggcctta ggatatctct tttcctactt
     2221 cctttttctt tcctagagct cagaatagca agattccggg caggaaagag tgtagcttag
     2281 tgacagggct taagcttact agcttagtgt gtagcttgtt taatgtgcat aaggcccctg
     2341 gtccatgcct agcaccacaa gcaaacaaag aaacaaacca acaacaaaaa agagaggaaa
     2401 ttttatatct agcaaataag tgtcactgtc atgtgtttgt ctcaattgaa agtgtgaccc
     2461 gtatattgtg tatgccagta atttttcaaa tgcctttatc tttgtaatgc ttatgaagct
     2521 attacactgt aaaatatgct ttcagtggaa atcaatcatc tcaaacatca gggtaactta
     2581 ccacaaaggt aagtcatttc tgtattccat agaattctgt gaaagacatg gggcgagaaa
     2641 acttgaaagt ggttctagaa agaatgttgc tccatttcat cctgttaggt taagagtgga
     2701 ctgaactacc tgccttgtcg cctcaccttg taaaaacacc aagcacacta gacattgact
     2761 cttatgccag ttgattctag ttgtcacatc tactttactt ctgctatcaa cacaagttct
     2821 aaaaatgttt caagtccatc gtggattgct gaatcagagc aactgtcaat atgcagaaca
     2881 tgagatttcc acagtcctca tatttaacca ccgaagtgtg ggcatcatat taagaagaca
     2941 gttgtgtgat acacagtgtc gtcatttgta gtcattagct atttggatgt ttccatacat
     3001 aagtatctct gtgtatatgc tacatctatc cccatagaaa ctgaagcact attcgaactg
     3061 tagataaact gcctggaaac atgttgtatg cgtgctggct tatggagctg tatgaaccaa
     3121 tggatttgta tgggtttgga tgcatgctgt atgtgtgatc ctattttgga aaagaggacc
     3181 tcttgtattc ataagattct caaagaatct taccaaagaa cagaacagtc tttttatatt
     3241 ttatggctct tcgtatgttt acaatcatca acatgagctg ggacaaaata atttttgtaa
     3301 aatatctacc ttgttggctt attgtcccat tttcataccc ttggatttca acctagaaaa
     3361 ttgtctccaa ttgcttatct gtgagaagag cgtttaggac aaacttagac tccagaagtt
     3421 ctttcttgag gagggcaagc accttttgga aagccttaag gaagatgcta tccacagaat
     3481 ggtcttcttt ctgaaaggac aatgacatct ccttcacaat ctcattttaa atgcattttg
     3541 catgggccct acaggttaca gacatcaacc aaccgaaatt acggcatcgg atgcgtagat
     3601 gtgttgtatc tgttatattt ctaggagctc tggggacaac tgactctact ttttgaagtt
     3661 gttattatag agtgattaaa gctttgtgct gatcactgtg aaaaggtcac tctttatata
     3721 ttacaccaaa aaaatggtca tgtttgagtg tggtctttct gtaagcacca cct
//
