LOCUS       NM_001107942            2210 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ladinin 1 (Lad1), mRNA.
ACCESSION   NM_001107942 XM_001063663 XM_233122
VERSION     NM_001107942.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Kang,D., Oh,S., Ahn,S.M., Lee,B.H. and Moon,M.H.
  TITLE     Proteomic analysis of exosomes from human neural stem cells by flow
            field-flow fractionation and nanoflow liquid chromatography-tandem
            mass spectrometry
  JOURNAL   J Proteome Res 7 (8), 3475-3480 (2008)
   PUBMED   18570454
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1, BP504151.1 and BC167044.1.
            
            On May 30, 2008 this sequence version replaced NM_001107942.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.52034.1,
                                           SRR26643294.47782.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351, SAMN11044071
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-15                JAXUCZ010000013.1  49801347-49801361
            16-99               BP504151.1         1-84
            100-102             JAXUCZ010000013.1  49815707-49815709
            103-604             BP504151.1         86-587
            605-2209            BC167044.1         1-1605
            2210-2212           JAXUCZ010000013.1  49815707-49815709
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..2210
                     /gene="Lad1"
                     /note="ladinin 1"
                     /db_xref="GeneID:313325"
                     /db_xref="RGD:1310652"
     exon            1..66
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..1588
                     /gene="Lad1"
                     /codon_start=1
                     /product="ladinin-1"
                     /protein_id="NP_001101412.2"
                     /db_xref="GeneID:313325"
                     /db_xref="RGD:1310652"
                     /translation="MSVSRKDWSALSSLARQRTLEDEEEQERERRRRHRNLSSTTEDE
                     SPKLTQNGAQRSVERLPSVEEAEVSKPSPPASKDEGEEFQAILRTRKGRRQRQQVVGA
                     VQAPGQEKVEAEEERDSLGPEQTVSQPLVPKKKVESLPRRRLSREQRGPWAQEEECLK
                     SRELVEGEKGRPEETAAQQKSPVSEKTPVSAKRLVSEKACPSEKGTATEKASPTEKRP
                     EKLVPERTSVTEKSPAPEKTLVSLKTAAPERRSPPVLEKATVSEKMQERKLVSEKASI
                     FEKPLVSETKLTPKKAAVSEQPQTPGGSQATTREVSGRALPGKSPPSSAEQSAPDPPT
                     KASRFLPVTLQVKIPSKDEDADISSPTLTYSSSLKRSSPRTISFRMSLKKDNPETTLT
                     RSASVRLPASTVKLGEKLERYHTAIQRSESVRSPGSSRTEVLVTPAGVASKRHLFEKE
                     LSGQNRTEPTSIRKENLRLSGVVTSKLNLWISRTQDSGDHGPQEVRKEASATKRAQWG
                     NKSTTSLDAEV"
     exon            67..204
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            205..1063
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1165
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1209
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1282
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1283..1420
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1421..1507
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1508..1582
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
     exon            1583..2210
                     /gene="Lad1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcacgcggcg gccgcggggc tcggcagcat gtcggtcagc agaaaggact ggtccgcgct
       61 gtctagcctg gcccggcaga ggactttgga ggatgaagag gaacaggagc gtgaacgcag
      121 gcggaggcac cgcaacctga gttcaaccac agaggatgaa tctccaaaac tcacccagaa
      181 tggagctcag agatctgtgg agaggctgcc cagtgtggag gaagcagagg tctccaagcc
      241 atcccctcca gcctccaaag acgaaggcga agagttccag gccatcctca ggaccagaaa
      301 ggggcggaga cagaggcagc aggtggtagg ggctgtccag gctccgggac aggagaaggt
      361 agaggcagag gaggaaaggg acagcctggg ccctgagcag accgtgtcgc agccccttgt
      421 gcctaagaag aaagtggagt ccctgcctcg ccggagactg agtcgggagc agcgaggccc
      481 ttgggcccag gaagaagaat gtctaaagag cagagagctt gtggaaggag aaaaggggcg
      541 tccagaggag acagcagctc agcagaaatc gcctgtctca gagaaaaccc cagtgtccgc
      601 caagagactg gtttcggaga aagcctgccc ctcagagaag gggacagcca cagagaaagc
      661 gtctccaacc gagaaaagac cagagaagtt ggttccagaa agaacaagtg tgacagagaa
      721 gtcaccagcc cctgagaaga cacttgtgtc cctgaagaca gcagcaccag agagaaggtc
      781 ccctccagtt ctagaaaaag ccaccgtctc tgagaagatg caggagagga agctggtgtc
      841 ggagaaagcg tccatcttcg agaagccact ggtctcagag acgaagctga ctccaaagaa
      901 ggcagcggtg tcagagcagc cccagacccc tgggggaagc caggccacca cgagggaggt
      961 cagcggaagg gccctccctg ggaagagccc accttcctct gcagagcaga gcgcaccaga
     1021 cccgccgact aaagcgtctc gcttcctacc cgtcacactg caggtgaaaa ttcccagcaa
     1081 ggatgaagat gcagacatat cttcacccac actcacctac agcagttccc tcaagcgctc
     1141 cagccccagg accatctcct tccggatgag cctcaagaaa gacaacccag aaacaacctt
     1201 aacccgcagt gccagtgtga ggctgccggc tagcacagtc aagctagggg agaaactgga
     1261 gagatatcac acggccatcc agaggtcaga atccgtcagg tctccaggct cctcccgtac
     1321 cgaagtcctt gtcactcctg ctggtgtagc cagcaagcgc cacctctttg agaaggaact
     1381 gtcaggccag aaccgcacag aaccaacctc catccgaaag gagaatctgc gtctgtcagg
     1441 ggtcgtgaca tccaaactta acctgtggat aagcaggacc caggattcgg gagaccacgg
     1501 tcctcaggag gtacgaaaag aggcatcagc caccaagagg gctcagtggg gaaacaagtc
     1561 aaccacatct ctggatgcag aggtgtgacg atccctgtca ggacagacct gcaaacctgc
     1621 atcccaaggg ccttcgttgc agaccccact ccctttctgc ctctgggaca gtctggtcgg
     1681 ggcctttggg ggccaggaac atgaatggca ctcctccagc ccctctccag cccagactgt
     1741 gggcagatgt gctttggtac tttcttgtcc cgctgcagat acaaaatatc ctgaacccag
     1801 aaggccccaa agcacagccc tggcgcatca gctaatggag tctccatgtc ctccctaggg
     1861 actgcctccc tagggactgc ctccctttgc cctgctcact tccagcatca agccacatta
     1921 ttttgcaaac tccagagtta tgtcttgcct gctcccggca ggcactcagt gtgcctgtga
     1981 catctccaca ctatgtccta gacctgttga tggctccctg aggctttttc aagccagact
     2041 ggaaaggagc agcccatgtg ctacatccgc tgcttgtgct gtgttcccca ccatcctgct
     2101 gccctgatcg ggagctcagt gcccttttgt cttaccccat gcctattctc tcacccagaa
     2161 aaaaccttcc ccaggaagga tctgataaac tcattcagtc tcaggcataa
//
