LOCUS       XM_039094027            7064 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus laccase domain containing 1 (Lacc1),
            transcript variant X2, mRNA.
ACCESSION   XM_039094027
VERSION     XM_039094027.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094027.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7064
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7064
                     /gene="Lacc1"
                     /gene_synonym="RGD1310185"
                     /note="laccase domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 10 ESTs, 1 long SRA read, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313790"
                     /db_xref="RGD:1310185"
     CDS             69..1361
                     /gene="Lacc1"
                     /gene_synonym="RGD1310185"
                     /codon_start=1
                     /product="purine nucleoside phosphorylase LACC1 isoform
                     X1"
                     /protein_id="XP_038949955.1"
                     /db_xref="GeneID:313790"
                     /db_xref="RGD:1310185"
                     /translation="MAEAVLIDLSGLQLNSQENCHQMVLKTLDGIHDHHAPKAKFLCI
                     ICCSDATNGKGGEYGLCELEAGNGFSSLAGKFETVSHPSLAASLYSVKQKIDEEDLSR
                     VKVIVPEHRRLLMEAYVDQLFTAVYEFEFEDLQVAQRESLLKPSTGVNVTTAHKLEDV
                     QSEIESYLRSLPALKGDLTIVTSPLIPDIFLHGFTTRTGGISYIPTLSSLNLFSSSKR
                     RDPKVVVQENLRRLANAAGFNAEKFYRIKTDHASEVWVMGKKEPESYDGIITNQRGIT
                     ITALGADCIPIVFADPVKKACGAAHSGWKGTLLGVAMATVNAMIAEYGCNLEDIIVVL
                     GPSVGSCCFTLPRESATSFHNVHPSCVRQFDSPNPYVDIRKATRILLERGGILPQNIQ
                     DQEEDLDLCTSCHPEKFFSHVRDGLNFGTQIGFISLRE"
ORIGIN      
        1 ggagggctgt gtaaatctgg ctgatttggc ataaaagtct ttgggggaaa aaggtgcctg
       61 actgaagaat ggcagaagca gtcttgatag atctctctgg tttacaattg aactctcagg
      121 aaaactgtca tcagatggta ctgaagacgc tggatggtat tcacgaccac catgccccca
      181 aggccaagtt cctttgtata atatgttgca gcgatgccac caatggaaag ggtggggaat
      241 atggcctctg tgaactggaa gcaggaaatg gcttttcaag tctcgcggga aaattcgaga
      301 ctgttagcca tcccagcctg gctgcctctt tgtattcagt taaacaaaaa atagatgagg
      361 aggatctgag ccgcgttaag gtgattgtgc ccgagcacag gagactgttg atggaggctt
      421 atgttgacca actcttcacc gcggtgtatg agtttgagtt tgaagattta caggtagctc
      481 agagggaaag ccttttgaaa ccgtccactg gcgtaaatgt gaccacagct cataaactgg
      541 aagacgtcca gagtgaaata gaatcgtact tgagaagcct gccagcgttg aaaggggacc
      601 taactattgt cacatctcct ttgatcccag acatcttcct gcacggattt acaactcgga
      661 caggtggcat ttcttacata cccactctca gctcactcaa tcttttcagt agttccaaac
      721 ggagagatcc caaagtagtt gttcaagaaa acctccgcag gctggcaaat gctgcagggt
      781 ttaatgcaga gaaattttac cgaataaaga ctgatcacgc cagtgaagta tgggtaatgg
      841 ggaagaagga gcctgaatct tacgatggaa taattacaaa tcagagagga atcacaatca
      901 cagctcttgg cgcagactgt atacctatag tctttgcaga tcctgtgaaa aaagcatgtg
      961 gggctgctca ctcgggctgg aagggcactt tgttgggcgt cgctatggct actgtgaatg
     1021 ctatgatagc agaatatggc tgtaatctgg aggacatcat tgttgttctg ggcccttcag
     1081 tgggatcttg ctgctttact cttcccagag aatcagcaac ctcatttcac aatgttcatc
     1141 cttcgtgtgt gagacagttt gactcaccaa atccctacgt tgacatccga aaagccacca
     1201 ggattcttct agaacgagga ggaattcttc cacagaatat tcaagaccag gaggaagatc
     1261 ttgacctctg cacatcttgc catcctgaga agtttttctc ccatgtccgt gatggcctta
     1321 acttcggtac acagataggc ttcatatccc ttagagaatg aggttcttgt ctggaatttt
     1381 gcataaatgc ttcccgtatc cttctacaat ggctgcaaaa gaaaatattt agctttttga
     1441 tttatataaa accatgagga ttacaaaaga taattcatct ttagggtatt ctctcactgt
     1501 taccggatgc acaatgacct tggtctaatt cttatgacaa ctgatgaaaa aactcagtga
     1561 gatgtcattg ctaacgttgt tctctgtatc tataaatcaa ggccggatct gtttagttca
     1621 gtattcacta gatgccgact tttgttcagg aatgggactc agcacagtga attgaaatga
     1681 agacaccttt ctcatttgaa tcaaatgcag taggggagat aaacgtttcc ttttaaatgt
     1741 atatttttaa ctgccttata aaataccagg tttccttatg ctgttctcaa gcaccatgtt
     1801 tttctggccc tccgctctcc ctttccctgg ccccttgtgt accctttcac tgcagaagcc
     1861 cctctttcct gtctcatgtg ttttgttctc ccttgcacaa tcccctttta tgttcccttt
     1921 ctagtttcaa cacctatcca cacttatacc cacagattta catagccata tacatgtatg
     1981 tttacataaa cattaaaggt tagaatttat atataagaaa gaacatgtgg tgtttcttat
     2041 tctgagtctg gattattttg ctcataataa ataattccag atccatcaat ttttcctata
     2101 agtttgataa tttcattatg gctaaataaa atactgtgtg tatgtactgt atttctgtta
     2161 tccattcatt tgccaatgaa caagaaggct agttccaaat ccttgctatt gtgactagaa
     2221 cgtcaataaa tgtgcatgtt ttgtgtcttt gtggcaggag agagtatttg ggtatatgcc
     2281 cagaaacaag ctaggtgggt cccaaacctg ttttggtttt ttgtttcctt tatgtatatt
     2341 ctcttgagaa tttaatgcat gtttacaatg aagtgtgata ctaaccatcc ttcactcccc
     2401 atccagctct tgcccaggtt ttcccaatac accactctcc caccttcatg tcctcactgt
     2461 tcagtttctg tgaaacctcc atgctgattt ctatggtggc tgttctggta tacactccca
     2521 ccaacagtga acatgtgttc aactttcccc acatcccatc agcactcaac atttttcttt
     2581 ctatttactt attttttatg tgtatgcatg actgtgcacc acatttgtgc agtgaccaga
     2641 gaggccagaa gagaatgtca gatcccctga gactggagtt accgatggct ttgagccaca
     2701 tataggtgta gggaatcaaa cccagatcat cggaagagga gctagtgttc taatccctgg
     2761 agccacctct ccagctctgt catgctttcc tgagtagcag acattctcac tggggttagg
     2821 tagaatctta agagttttaa catcgatgtc tctaaaggca tgggatgcat tttcagtata
     2881 gttccgggcg ttcgtgagtc ttttgagaat gatctctttg tttcatgagc tcatttattg
     2941 acaggtggct ttactgctta gttttgaatt tttttctaat atgctataga taaatgctaa
     3001 gcccgtgttt aaagaatagc tggtaaaaat tctgtactgc tctgtaacct gttttcctgc
     3061 tgatagttcc ctttgctatg caagaggggt ttttttgttt tgtgtaatac atttgcaaat
     3121 tcttgtgcaa ttagagtcct attttaagac ttccagtata tgatggcttc ttggaatatt
     3181 tttctctagc agtatcagaa tttcaggtta gggtctttga tccatggaca gagtttggta
     3241 gtgttcctgc tctttttgtc tgtggaaagg ttcgccatgt tgttggtgct aaatcttcct
     3301 taaacgacgt gtagaattta gcagtgaatc cacatggtcc caggttttcc tttaggggaa
     3361 acttaattag cactttgatc tcttgctcat tataggtttg tttaaatagt tcctatcttc
     3421 tgaatttaat ttggtaagtc ataaatgttc tttagaagcc cttggctgta tcctagaggg
     3481 tctggttgat tgtgttttcc ttttgcattt gattccacga atgtttttaa gttcctctgg
     3541 gttttttttc caggactcac tatttattct ccaagcattt gtatagttta tgaatttctc
     3601 ttgatgattt ttagttttat tccactatag tctcaaaaga tagaatgatt ccgtctttcc
     3661 tttgtatttt attttatttt ttgtatttgc taatgtttgc tttgtggtca gttttagaga
     3721 atgttcaatc cttgttctgt taagtgtgta tttactgtct gttggatgga taccacttaa
     3781 ttccaggtga tctgtggtat aatttagctt tgaagtttct ccgccagttt tagagcggaa
     3841 gagcccatgt ctaccttcat gattgtgtca gagtctgtgt gaagtgtttt gcctttcagc
     3901 attagtctta tgagagatat ttgcagttgt tctatctccc tggtgaattg tttcttgtgt
     3961 tatatgtagt ggtctctcta tctctagttt tggttgacat ccaccataat gggtacaaga
     4021 attgctaccc tagcacgtcc acagctttca tttgcttagt atgccgattt ccaccttctg
     4081 actgtgctct gttgttgttg tttatttttt gtttgttttg tatttgctgg ttaagtgttt
     4141 cttgaataca atagatgtcc cttgttttat taattccatc agttagtctg tgtctcgtta
     4201 gttgagatca tttgtattta aggtcattcc ctatgatttt ctgactgact aaattattaa
     4261 tatttctgtg ttcctactct gttagttgta ggggttttct ggttgtgcct gactacttcc
     4321 ttcccaactc attttggtca ctcatgggat gtgtcctttt ctgtgtctcc atgaatgaga
     4381 ctgttttccc tacatattta gtattcctct aagatttttc cacaataatt gccttaattt
     4441 agccatcagt ttaaaatatt tttgttgact ctcaaaactt tgttgacaat cattttcttc
     4501 tagagcttga aatgtgtaat tccatacatt cctggttttg tgtttcttac aaatgatttg
     4561 atgttaggtt tccccctttg tacatgagct ggaattattt cccctctgcc tttagtcttt
     4621 gttttacgaa tatgacgttg tgactgtggt attttatgga gaatttctca gatcacatct
     4681 atttgggctt ctgccttttg tgtttagatg ttgatttctt tctctaagtt tagggaaatt
     4741 cttctataag ttaattgagt aaattaccta tgccttatga cactatctca gcgccttcta
     4801 cttcactggt ttttggcttt tgaatgtacc tcagactttt tgaaattatt ggttgtttgc
     4861 tattagtttt tgttatatgt atctgaatgt agtactgtct gagcttagtc ccccccacct
     4921 tgaaattcat tcattttaat tcatctcgtc tgttagtgat gctttctcat gtgatttgac
     4981 tcgattgttt ctttcattcc cagaatttcg gtctcattct tgctagatat ttcctccatg
     5041 ttttaaaatt taaaattttt gtttgagata aaatgtttct acacctaaga cttgatttta
     5101 aaaaccgatg agtactgaag gtacaaggat tggttttact cacaggtcag gagaaaggag
     5161 ctattgtaga gaaaatgttc tattagatgg gcccaaaatg tgtatagaat tttaaaagtg
     5221 ttttaaaatg tatatatgga tatgtgtata tctcagtgtg tctatatgca caagtgtatg
     5281 cagatgcctg cagagggcag aagaaggcat cagatctcct agagctggag ttactgtaac
     5341 tgtatgaacc atccaatgtg agtgctaaga acccacaaga ctagcaacca ctcttaacct
     5401 cagagtgtag cctagtggtt ttcaaccttc ctaattctgc aactctttaa tacagttcct
     5461 cgtgttgtgg tattccccaa ccataaagtt atcttgttgc tacttcacaa ctgtaatttt
     5521 gctactgtta ttaatcataa cataaatatc tggaatttct gatagtttct gctgctttag
     5581 tcctacacac ggatttttaa caaagtacag gcatagcagg gagagagacc accataaagc
     5641 aaggcatgaa actgaacaat tataacctac ccagggcaga gaagagtgta agcagatgca
     5701 cagcgtggga aacagcgatc ccaaatcaca tggcaggaag ggggagtttg ctctttagcc
     5761 agtgagtatg catcaaagca gagcattctc ccattccaca gcatctaact taaggagatg
     5821 gattgaaggg tgagtggcca aagatgttga gtggaaaccg agtattttta aaaagagcta
     5881 acggtctcgg ttgaggctgt aggattccag atggatctga ggacagataa acccagcatt
     5941 tcagagggga ggtttgggat tagaggaggg ataaagagtt tcacctcatc cagcatgaat
     6001 agcatccgca tggaaacagt tggtcaacga ttgaaagtac cggccgggac cttacaacga
     6061 agcctggcac agacaagttt ggaagctgcc tgtgaagcag tgacacttgg gtctctggca
     6121 tcagattgga ttgtctgggt gaaaactgag gtcctgagat ggaccctccc acaacatgcc
     6181 tttgaagaac aagagataga ccagtaaaaa taacctaatg ttagggattg aaagccagga
     6241 ttatttaagt cagtgaacaa atgttcaggg aaaagtgtga actgaaaaga tcagggaatt
     6301 aactgtggtg aagttgttct gggggcaggg atgggcgtga ccaattacat tctatcttat
     6361 atatgtccta tttgtgcaca cagactatac tttttggtga atgcaaaaga ttttctcata
     6421 tattacctta ctgtgccttt ataggtccta taaaatcagt agggcaggta ttgacccttt
     6481 tgtccaaagg taaaagtgag cctcgtcaag gtaaagattg gaatcttata atttgtatca
     6541 ttgagctaag tgttggaatt gtgtaatttg tgatgatgtg ttttacagct tgtaatttcc
     6601 tttcaggttt tatgcctgct caaagatctt tcaattctat tttccacttt ctgttaatat
     6661 tcttttcgtg tatttgatgc gcggctaagt aaaaaacagt tatgtagccg tacgggatgg
     6721 tcaacctagt gcaaagtggc agtcagtacg gggctgccac agctggacag ccttgcttag
     6781 tgtaatcctc cgggaatccc gaagcccagc gtgtaattta aataaaatac ttaatttctc
     6841 cacattcaag gaaggcatta agtagaaaaa aaaggtagga atgccaaatt cacatgaagt
     6901 attctttccc ccatgaaaat ataaagatta gtctcacctt cagaaagact gtattctaaa
     6961 tcctcaccgt gtgttatttt gtttgaagct tataaatttg ggcagtcata cttcgcattg
     7021 tggatgacat tacaaaaata aataaaatca tgttttatta ccta
//
