LOCUS       XM_056985111             450 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to ribosomal protein S15a
            (LOC691716), mRNA.
ACCESSION   XM_056985111
VERSION     XM_056985111.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..450
                     /gene="LOC691716"
                     /note="similar to ribosomal protein S15a; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 long SRA reads, 48 Proteins, and 91% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:691716"
                     /db_xref="RGD:1596000"
     CDS             13..405
                     /gene="LOC691716"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:19..21,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: 40S ribosomal protein S15a"
                     /protein_id="XP_056841091.1"
                     /db_xref="GeneID:691716"
                     /db_xref="RGD:1596000"
                     /translation="MVXMNVLADALKSINNVENRGKCQVLIRPCSKVIVRFLTVMMKH
                     GYIGEFEIIDDHRAGNIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFI
                     VLTTSAGIMDHEEARRKHTGGKILGFFF"
ORIGIN      
        1 ctcagtgtca ccatggtgtg aatgaatgtc ctggcagatg ctctcaaaag catcaacaat
       61 gtggagaata ggggcaaatg ccaggtcctc atcaggccgt gttccaaagt catcgttcgg
      121 ttcctaactg tgatgatgaa gcatggctac attggtgaat tcgagatcat tgatgatcac
      181 agagctggga acattgttgt gaacctcaca ggaaggttga acaagtgtgg agttataagc
      241 cctagatttg atgttcaact caaagaccta gagaagtggc agaacaatct gctcccatca
      301 cggcagtttg gtttcattgt gctgacaacc tcggctggca tcatggacca tgaagaggca
      361 agacgaaaac atacaggagg gaaaatcctg ggattctttt tttaaaatgt aaagcataaa
      421 taaaaagccc ctgtggactg tgaaaaaaaa
//
