LOCUS       XM_039111358            3288 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hypothetical protein LOC691354
            (LOC691354), mRNA.
ACCESSION   XM_039111358
VERSION     XM_039111358.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111358.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-152               JACYVU010000162.1  73624516-73624667
            153-253             JACYVU010000162.1  73634971-73635071
            254-352             JACYVU010000162.1  73637485-73637583
            353-477             JACYVU010000162.1  73640777-73640901
            478-621             JACYVU010000162.1  73642121-73642264
            622-660             JACYVU010000162.1  73647939-73647977
            661-798             JACYVU010000162.1  73649478-73649615
            799-883             JACYVU010000162.1  73650111-73650195
            884-1080            JACYVU010000162.1  73651250-73651446
            1081-1204           JACYVU010000162.1  73651677-73651800
            1205-1392           JACYVU010000162.1  73657387-73657574
            1393-2361           JACYVU010000162.1  73658047-73659015
            2362-2362           "N"                1-1
            2363-3288           JACYVU010000162.1  73659016-73659941
FEATURES             Location/Qualifiers
     source          1..3288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3288
                     /gene="LOC691354"
                     /note="hypothetical protein LOC691354; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     3 Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:691354"
                     /db_xref="RGD:1585063"
     CDS             127..2496
                     /gene="LOC691354"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     C1orf127 homolog"
                     /protein_id="XP_038967286.1"
                     /db_xref="GeneID:691354"
                     /db_xref="RGD:1585063"
                     /translation="MWGSVAVVWTVCLACIQPAVFPWILPFRSNKDRPHPARGALTEK
                     VECFSDYMTLQISRSHVLGLRQWLAGVLRLRGTKRSPKHLDSLLPKCGYLLHPAHEGG
                     YIFRALYSGCFVQKEKADYRLEIRMFGRGAERLKESNRFVMKCPMIVARLGEQSVSCH
                     PSFIQVSRPWPPRSDGGQTPWLLSLRGELVASLEDASLIGLEVDIGATMVTIRSPRQE
                     FLQRLEVWNTSLELLPLWLVSGSYAYSFEAACPLVSFQPGSEISVHIPKQRLGLVKRG
                     SLVEESLSPRFLQVQQSDTFTVAEDRDFVVVSMPATLLLRDQPCQEVRESPGTQAFYR
                     VDLSLDFAEMDSPVHWTVENFFQCAGSREESLVLTTTPTALPALSPGWGTTPVETPSA
                     TSSQLQTPPMAAPEELPQHFVHQPTKESTKQELTVPFMQLTRPAGGSRVLMTFPSSSA
                     GQERQGPQTPPEKADLSPHPQTPATLSSEHTEVSQTGPGPSHLVSLTPNSPSTHLSSG
                     IPSSPWPSWPSDGPQMLPCSEPSVTLTEDPRAMRAERDSVQPSGSPFPPGGLSSETAN
                     STESMELIPREPDHVSEEFLPLTRLFMSSLAKEGLIFHHDPERPQERPIIKAEEPLQN
                     DHDPSGEETRGYLDLPTSEPSQEMKGLATDATFTASGRRQPDARAYLETSSPEPTGRH
                     RVGPAALQTALPKGLLASASEKPAAPSEGGADRTLQLESVPLRSEGWHDLGAAHTANP
                     LPSPTXKPLAPAEVLFLPSGEPGNILPSGQESMESRLAPTADSHQPPEP"
ORIGIN      
        1 gcacctggct ggcacctggg tgactcttgg caaccaaggg aaggggacag gctggccctt
       61 tacttctgag ctgggagtgc cactagataa actcctccag gggaggaggg agccagtggg
      121 ctgaggatgt gggggtctgt ggcagttgtc tggaccgtct gtctggcgtg cattcagcct
      181 gcggtgttcc catggatcct ccccttcagg tcaaacaagg acaggcctca cccagcacgt
      241 ggagctctga cagagaaggt cgagtgcttc tcagactaca tgaccctgca gatctcgagg
      301 agccacgtgc tgggtttgag gcagtggctg gctggggtcc ttcgcctgcg gggcaccaag
      361 aggtccccca aacacctgga ttctcttctt cccaaatgtg gttacctttt gcatcctgct
      421 catgagggag gctacatctt ccgtgcactg tactctggct gctttgtaca gaaagagaaa
      481 gcagattaca ggttggaaat cagaatgttt ggaagagggg cggaaaggtt gaaggagagc
      541 aatcgcttcg taatgaagtg tcccatgatc gtggcaaggt tgggtgagca gagcgtctcc
      601 tgccatccct cattcatcca ggtctctagg ccctggcctc cgaggagcga tggtggacag
      661 acgccgtggc tgctgtccct tcgaggggag ctggtggctt ctctggagga cgctagcttg
      721 ataggattag aggtggatat tggcgccacc atggtcacca tccgaagccc aagacaagaa
      781 tttcttcaga ggctggaggt gtggaacacc tccctggagc tcctgccatt gtggctggtg
      841 agcggttcct atgcctactc cttcgaggcc gcgtgcccac tggtgtcttt ccagccaggg
      901 tcagagatct cagttcacat ccccaagcag agactgggtc tggtcaaaag aggctccctc
      961 gttgaagagt ctctgagtcc cagattcctt caggtgcagc agtctgacac cttcacggtg
     1021 gccgaggaca gggactttgt ggttgtcagc atgccagcaa cactgctgct tcgggaccag
     1081 ccgtgccaag aggtcagaga atccccaggg acacaagctt tctacagggt ggacctgagc
     1141 ctggacttcg cagagatgga ctctccagtg cactggaccg tagagaactt tttccagtgt
     1201 gcgggatcaa gagaagagtc actggtccta acaaccacac cgactgctct tccggccctg
     1261 tcccctggat ggggaactac accggtagaa acaccatctg ccacctcttc ccagctccag
     1321 accccaccaa tggctgcccc ggaggagctc cctcaacatt ttgtgcacca gcctactaaa
     1381 gaatccacca agcaggaact gacagtgcca tttatgcaac taactagacc tgcaggagga
     1441 agccgggtgt tgatgacttt cccctcctcc agtgcagggc aggaacgcca aggtcctcag
     1501 acccctccag agaaagcaga cttaagtcca catccccaga ctccagctac actctcctca
     1561 gaacacactg aagtttccca gactggccct ggcccttcac acttggtttc cctgactccc
     1621 aattccccga gcacacattt gtcttcagga atcccctctt ctccgtggcc ttcctggcca
     1681 tctgatggtc cccaaatgct cccgtgttct gaaccatcgg ttacgctaac cgaagatccc
     1741 agagctatga gagctgagcg ggactctgtt cagccatcag gaagtccctt ccctccagga
     1801 ggtttgtcaa gtgagactgc gaattcaaca gagtccatgg aacttatccc gagggaacct
     1861 gaccacgtca gtgaggagtt tctgccattg acaaggctct tcatgagcag cctggctaaa
     1921 gagggtctga ttttccacca tgaccccgag agacctcagg agagacccat aatcaaggct
     1981 gaggaacctc tgcagaatga tcatgatccc tctggagagg agaccagagg gtacctggac
     2041 ctgccaacat cagagccaag tcaggaaatg aaagggctgg cgacagatgc cacattcaca
     2101 gcctcaggaa ggaggcagcc agatgccagg gcctatctgg agacctcgag tccagagccc
     2161 actgggaggc acagagtggg tccagcagct ctccagacag cgcttcccaa gggccttctg
     2221 gcttccgctt ctgagaagcc tgcagcccct tctgaaggag gtgcagatag aaccctacaa
     2281 ctagagtcag tacctctgag gtctgagggc tggcatgatc tgggggctgc acacacagcc
     2341 aatcccctgc cttcacccac cncaaaacct ttagctcctg cagaagtcct atttcttccc
     2401 tccggtgagc ctggaaacat actccctagt ggtcaggagt caatggagtc caggttggcc
     2461 cccactgctg acagccatca gcctcctgaa ccctagtgcg tgtggagggg tgcttcgaga
     2521 ggaccctatg gctgagcctt tctggagagt tcagggatga gtcataggag tatccaggga
     2581 ggggaggccc agaggaaagg gaggacatgg tttgatatgt tcacgcttcc cttcaggaag
     2641 ccggctagga caggaccaga gcccttggct tccttgagct ggtccaactg tgttttacat
     2701 cttccttccc tgttaaatct gggaaggcat ctgggcagat gctgccctat agctgggccc
     2761 acccacgact agggctctgg tctccactcc agctctataa ccttagcaag gcactagcct
     2821 ttctgagcct tagtttcccc atcaaggaaa cacagtgggt ttatggatgg tgcgtgtgtg
     2881 tggggtgcgt gaacaggatc acacagagtg tagagccctg cccaagctgg gaaccccagg
     2941 gggggaggag gatggaggat ggagagtcag tactttggct tttgttcgtc ccatgccgtg
     3001 gtttctatgg tagcagctgg ttcccttctg ggcttggcta gacccattga cctgcagtga
     3061 cccagagctc ccaaactctg tggcccagaa gcccagctgt ggccaggcac agtgaccggg
     3121 accggaaccc cactctgtgc ctccttgaga gggcagtgcc ttgcccaccc caacccccaa
     3181 ccctaggctg gccgacctgg aagtgggatt tgaaatgcag ccaagactcg aggaggccag
     3241 cagccatgcc agcccagaat gcgaactaaa taaataaata aataatca
//
