LOCUS       XM_001077719            1273 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to oocyte specific homeobox 3
            (LOC691325), mRNA.
ACCESSION   XM_001077719
VERSION     XM_001077719.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001077719.6.
            
            On Jan 21, 2021 this sequence version replaced XM_001077719.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1273
                     /gene="LOC691325"
                     /note="similar to oocyte specific homeobox 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 Proteins, and 76% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:691325"
                     /db_xref="RGD:1585091"
     CDS             321..1256
                     /gene="LOC691325"
                     /codon_start=1
                     /product="homeobox protein Hox-B3a"
                     /protein_id="XP_001077719.1"
                     /db_xref="GeneID:691325"
                     /db_xref="RGD:1585091"
                     /translation="MIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVT
                     SRTPMQSSPSVPEQNLNWQESQGSSRESKPMALSDKHGGKQTGPVAPRKCRKERTQYS
                     AKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPE
                     TNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDG
                     AMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLL
                     DEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD"
ORIGIN      
        1 caccagcaga aatgaggagg atctgtgact tttaaagctt gggcaggaca ttcaattgcc
       61 ctcctccctg gcctgacagt ctgatattaa gataggagct agttgcaagt ttattgaagt
      121 attgagattg ctaataagct tgggaaccag gcagttagtt ggtcagaagg tctgagtgag
      181 ttctgctcta taagaagagc aaagtaaatg ctgggtaggc atgatgggtt gatgggtgct
      241 ctctgaagct tttctgatgt atttcctttt tccatgttct atagtacagg aacatactcc
      301 agtcagttca gaacacagat atgattgaag gtccctcctt tcttcccaaa ttccaaatgt
      361 cttcatatac ccccatggac accagttccc aattgcctca agagccttca tggaacttag
      421 cttttcaaat gggccagagt ccccttgtga cctcaagaac tccaatgcaa tcaagtcctt
      481 cagtgcctga acagaaccta aattggcaag agtcccaagg gtcatcaaga gaatcaaaac
      541 ctatggcact gtcagataaa catggcggta aacaaactgg ccctgtagct ccaaggaagt
      601 gccgaaagga acgcactcag tactccgcaa aacaaaagtc cgtgctgcaa gaacattttg
      661 ctgagtgcca gtacccagac aagaaactgt gtttggagct ggcaaccttg tttggtgtga
      721 cagagaatga gatcaaggtc tggttcaaga acaaccgggc taagtgcaaa cagaagaatg
      781 ttccagaagc actgccagag acaaatggag gccctgaagc tgtttcttgg tcaactgatt
      841 ttcctggttc catagctgtt gttggttgtg accagggaga gcccatggcc acagccattc
      901 tggatgtgga ttccactccc aaactgaact gcagccagga gtcttctctg gatggcaatt
      961 ggacctatga tggtgccatg tgttgtctgc cagaagacgt gcttgacggt aatgaccctg
     1021 tcactgctgg agactctggt gaatcagcac cagttgaagc ccagtctgac cttgcagcag
     1081 ctggagctcc agttgccatg gcagttgaca cccaaaaccc agaggagtgt gaggatttac
     1141 ctctattgga cgaaggggtc tggcaatgga tgcttgaaga ctttcaccaa ttggaagact
     1201 ggtttaccaa gaactacatt gagagtccta gcagtgcttc tcaccccctt gactagttta
     1261 gacgtttata tct
//
