LOCUS       XM_001077477             653 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to reproductive homeobox on X
            chromosome, 11 (LOC691272), mRNA.
ACCESSION   XM_001077477
VERSION     XM_001077477.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001077477.5.
            
            On Jan 21, 2021 this sequence version replaced XM_001077477.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..653
                     /gene="LOC691272"
                     /note="similar to reproductive homeobox on X chromosome,
                     11; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:691272"
                     /db_xref="RGD:1586239"
     CDS             54..653
                     /gene="LOC691272"
                     /codon_start=1
                     /product="rhox homeobox family member 1-like"
                     /protein_id="XP_001077477.1"
                     /db_xref="GeneID:691272"
                     /db_xref="RGD:1586239"
                     /translation="MAYKKYFFDFDYYGVDFYEEEVTTELQQGRAATADGSHTEEVIG
                     ILKELSYMNAVLDHNYNRPMKSDTRGNPQEPAQEEEEPVFQKPTTYYRKLKFTPEQLL
                     ELDRVFEETQYPDALQRKELAKLINVEEYTVKIWFNKRRAKIRKHQKALPCTNILPDK
                     QNYFPMRVLKETKNVVVLQEPPVDEFFCSQPHVGHPNWQ"
ORIGIN      
        1 ggcttgaagc ctttgtaact ccagggtcta gtgtcttctg cagagctcca gtcatggcat
       61 acaagaaata cttcttcgat tttgactatt acggtgtgga cttttatgaa gaagaagtaa
      121 caaccgaact ccagcaaggg agggcagcaa cggcagatgg tagccacacc gaagaagtca
      181 taggcatcct gaaggagctg agctacatga atgctgtgct cgatcacaac tacaatcgtc
      241 caatgaagag cgacacccgt gggaaccccc aggaacctgc gcaagaagag gaggagccag
      301 tttttcaaaa gccaaccaca tattaccgaa agctcaagtt cactcctgaa caactacttg
      361 aactagacag agtttttgaa gaaactcaat accctgatgc actccaaagg aaagagcttg
      421 caaagctcat caatgtagaa gaatacaccg taaagatttg gttcaacaaa cgaagagcca
      481 aaattaggaa acaccagaag gcgttaccat gcacaaatat cctacctgat aaacagaact
      541 actttcccat gagagttttg aaagaaacca agaatgttgt tgttcttcaa gagccacctg
      601 tagatgagtt tttctgctct cagccacatg ttggccaccc aaattggcag tga
//
