LOCUS       XM_001077082            4246 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to zinc finger protein 84
            (HPF2) (LOC691170), transcript variant X1, mRNA.
ACCESSION   XM_001077082
VERSION     XM_001077082.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001077082.8.
            
            On Jan 21, 2021 this sequence version replaced XM_001077082.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4246
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4246
                     /gene="LOC691170"
                     /note="similar to zinc finger protein 84 (HPF2); Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 24 ESTs, 3 long SRA reads, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 173 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:691170"
                     /db_xref="RGD:1587418"
     CDS             138..2147
                     /gene="LOC691170"
                     /codon_start=1
                     /product="zinc finger protein 883-like isoform X1"
                     /protein_id="XP_001077082.3"
                     /db_xref="GeneID:691170"
                     /db_xref="RGD:1587418"
                     /translation="MSAKPAMESVSFEDIAVYFTWEEWQVLDVAQKLLYRDVMLENYS
                     SLVSLGCCVIKPELILMLEREFGPWRVADTSIWNLPGYCITRPELNIKLQHGFEPWSG
                     SEASLWNLPDVHNVSALGNQETHLWQAEVTGGITSYEQMVEAELQIQEKIHRGAKTCE
                     YKECVETFYPNAQHTRNQTSQSYENAYGWEECKKTFYYQSTLTQHQRFHIGEKLYDSP
                     QCWEIFPWKSQLSVHETFHAGERRYECEECRKSFHRKANLIRHQRRTHSREKPYECIE
                     CGKTFYCKSDVTRHQRRTHSREKPYECVECSKTFYCKSYLIRHQSRTHSREKPYECTE
                     CTKTFYCKSDLTRHQTTHSGEKPFECNECSKTFYYKSDLANHQKTHTDDNPYECKECR
                     KTFCSKSSLNQHHRIHTGEKPYECNECKKSFNSKSNLTEHQRRTHTREKPYECSECWK
                     SFYCRSELTNHQRTHTVERFYECKECRKNFYCKSNLNQHQRTHTGEKPYECKDCNKAF
                     YCKSNLNQHQRTHTGEKPFACKDCSKAFYCKSSLVKHQKIHSGEKPYECEECRKTFFQ
                     KSDLTRHQRTHTGEKPYECTDCSKTFYCKSNLNQHRRTHTHEKPYECEECREAFYSKS
                     ELTEHQRTHTDEKPYVMFNIDCQLDKIWNHLGDRPIGMPVKDYLD"
ORIGIN      
        1 tcgctgctcc gctgtggcct ttgtctgtcc ccggccatct tagatctgta gcctcatccg
       61 gttctggagg atcggagacc actgcggcct ctgtctcctg tgacagtcgc ggcggggagg
      121 cccgcggagg acgcgggatg tctgcaaagc ctgccatgga gtcggtgtcg tttgaggaca
      181 ttgcggtgta cttcacctgg gaggagtggc aggtcctaga cgtggctcag aagctgctct
      241 acagggacgt catgctggag aactacagta gcctggtgtc cttgggctgc tgcgtgatca
      301 aacctgagtt gatcctcatg ttggaacgtg aatttgggcc gtggagggta gcagatacct
      361 caatctggaa ccttccaggg tactgcataa ccagaccaga attgaacatc aagttacagc
      421 atggatttga gccatggagt ggctcggaag cctcactctg gaacctccca gatgtccata
      481 atgtaagtgc cctgggaaat caagagacac acttgtggca agctgaagtc accggtggca
      541 ttacatcata tgaacagatg gttgaagcag aactacagat tcaagagaaa attcatcgag
      601 gggcaaaaac atgcgaatat aaagaatgtg tggaaacatt ttatccgaat gcacagcaca
      661 ccaggaatca gacatcgcag tcatatgaga acgcctatgg atgggaggaa tgtaaaaaaa
      721 ctttctatta tcaatcaacc ctcactcaac atcaacgatt tcatataggt gagaaactct
      781 atgactctcc acaatgctgg gaaattttcc cctggaagtc ccaactcagt gtacatgaga
      841 catttcacgc aggtgagaga cgctatgagt gtgaagaatg taggaagtct ttccatcgga
      901 aggcaaacct tattcgacat cagagaagaa cacatagcag agagaagccg tatgaatgta
      961 tagaatgtgg gaaaactttc tactgtaagt cagatgtcac tcgacatcag agaagaactc
     1021 acagtagaga aaaaccctac gaatgtgtag aatgcagtaa gactttctac tgtaagtcat
     1081 acctcattcg acaccagagt agaactcata gtagagagaa gccctatgaa tgtacagaat
     1141 gtactaaaac cttttactgt aagtcagatc ttactcgaca tcaaacaacg cacagtgggg
     1201 aaaagccttt tgaatgtaac gaatgctcga aaacattcta ctataaatca gacctcgcca
     1261 atcatcagaa aacgcataca gatgataatc cttatgaatg taaagaatgt aggaaaacct
     1321 tctgttccaa gtcaagcctc aatcagcatc ataggattca cacaggcgag aagccctatg
     1381 aatgtaatga atgtaagaaa agtttcaatt ctaagtcaaa cctcaccgag catcagagaa
     1441 gaactcatac cagagagaag ccctatgaat gtagcgaatg ttggaaatcc ttctactgta
     1501 ggtcagaact tacgaatcat cagaggactc atacagtgga gagattctat gaatgtaaag
     1561 agtgtagaaa aaatttctac tgtaaatcaa acctcaatca acatcaaaga actcacacgg
     1621 gtgagaaacc atatgaatgt aaagactgca acaaagcttt ctattgtaag tcaaacctca
     1681 atcagcatca aagaactcac accggtgaaa aaccgtttgc atgtaaagac tgtagtaagg
     1741 ctttctactg taagtcaagc cttgttaaac atcaaaagat tcattcaggt gagaagccat
     1801 atgaatgtga agaatgtagg aaaactttct tccaaaagtc agacctcaca cgacatcaga
     1861 gaacacacac aggtgaaaaa ccctatgagt gtacagactg tagcaaaact ttctattgta
     1921 agtcaaacct caatcaacat cggcgaactc acacacatga aaaaccttat gaatgtgaag
     1981 aatgtaggga agctttctat tctaagtcag aacttactga acatcaacga actcatacag
     2041 atgaaaagcc ctatgtgatg tttaatattg attgccaact tgacaagatc tggaatcatc
     2101 tgggagacag gcctatcggc atgcctgtga aagattatct agattgagtt aaccttcgga
     2161 gatgtctgta attatcttta tttggttaat tgaagtggga agacctacca taaatatgtg
     2221 tggcactttc tctggtttag gattatgtac tgcatgaaaa gggatggcac cattctgtag
     2281 actggagttc tagacgacat gaaaagaagg aaggtagatt aagcatgagc atgtgctatt
     2341 ttctgcttcc tgtttggttg ccacttggca aaatgcctca agctcctgcc accagaatct
     2401 ctaccatgta cgattggatt tcatgtgtga ggtactgcga gccacagcaa aaagtaacaa
     2461 atataggaaa ttggttctaa gatgtaaggc gctgctctga taaactggac tagatgatac
     2521 ttaggccatt agcaatggct ttcatgggga atgtagattt ggaactttgg gataataaaa
     2581 tctttgaatg ctatgctaca gagtttaatg ggctactgtg gtttaagttt ataagtgcag
     2641 actgtggcag ccttgctcac aaggtttcag ggaggaacaa gcattatcaa gaactgggct
     2701 agagaccact tgtgtgatcc tttgtcaaga atctggcttc attcaacctg tgatctgaga
     2761 gcctaaatga tgaatttaaa ggaaaagtac tcatttgttg ggtgaagaaa atttccaaaa
     2821 aggtaaatat tcaggctgtg gcacagctcc tggtaacttc acttataaaa gtttacaatg
     2881 aaaaagttcc attgcgaaga agataaataa aaaaatgatt aaaccttaca gtctctcaag
     2941 gattaggaag ctaaagcaag gcaaagctgc aggcaaggca ggtatggagg aagaggccct
     3001 gattagtaac agggataccc tgccctgccc ccagacaata ggaaatgtct gcattgccct
     3061 cctgccccac aggaaaggcg tccgcttgta aaaatgcaga ctcatttgaa agaagagaac
     3121 cgggattgag aagtcagctc aagggattcc ctgttctctg aagacaagtc cctagggaag
     3181 tgttcctgta gggtcagcac actgtaggcg ataggtttga tccaagaaga cattttatat
     3241 ttctgactag caacggccct tggaagcttt gtggatacga cactagtttc ataggcatgg
     3301 aagatgtaac actgaggggt caggtagatt tgctccaaag tttcggagag cagctgaggc
     3361 taggcattgt ttgtcaaaac tggagtctct acaggaaggc tctgaatgcc cactgcgtgg
     3421 acctgtgacg ataaactata atttgccatg gagactccag tatataagtg atgccaagag
     3481 catggcgtca tctaccaagg aaagctacag gcatggagtg gagccagttg gatagcagag
     3541 atcaaaggat ggggcttctg aagtactttg gattccaggt gattctatta caagtctcag
     3601 atgctgtgga catattgcag taagatatat tgttttcccc gctgggtttc aaccctagtt
     3661 tttttctttg gggaatggga atgtttatgc ttttatgtat tggaaccatg taacttgctt
     3721 tttgatatta aggggactca cagagtattt cagatgaaac ttggactttg gatattaaaa
     3781 cagtattgga attcttgaag actagggatt tttagtattg tatctgaccc actttacatt
     3841 ataaaatggc catcagcata tggggacaag agaggaaaag ttatggctca acaatgataa
     3901 tcatgtcaca ttgacaagga atacagttat ggtggctagt attgtcaact tgacaggatc
     3961 tggaatcacc tggtagatga acatctgaga atatctggga aagattttct taagttaatt
     4021 ggcatggaaa gactgacttt aaatgtttgt agccctattt catgggctgg ggtcttagac
     4081 ttcatgtaaa gaagaaagat ggctaagaat gaacatcgtt ctctgttttt gactgtggat
     4141 gccactggaa cagctgcctc aaacttctgc tactgtaact tccctgtcta gatgtattct
     4201 acctttgaac tgtgatccaa aataaatcca tccttaattt gctgtg
//
