LOCUS       NM_001419710            2063 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ribosomal protein lateral stalk subunit P1 like 3
            (Rplp1l3), mRNA.
ACCESSION   NM_001419710
VERSION     NM_001419710.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2063)
  AUTHORS   Bingle,C.D., Seal,R.L. and Craven,C.J.
  TITLE     Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a
            subfamily of the BPI fold-containing superfamily
  JOURNAL   Biochem Soc Trans 39 (4), 977-983 (2011)
   PUBMED   21787333
REFERENCE   2  (bases 1 to 2063)
  AUTHORS   Mechref,Y., Ma,W., Hao,G. and Novotny,M.V.
  TITLE     N-linked oligosaccharides of vomeromodulin, a putative pheromone
            transporter in rat
  JOURNAL   Biochem Biophys Res Commun 255 (2), 451-455 (1999)
   PUBMED   10049729
REFERENCE   3  (bases 1 to 2063)
  AUTHORS   Khew-Goodall,Y., Grillo,M., Getchell,M.L., Danho,W., Getchell,T.V.
            and Margolis,F.L.
  TITLE     Vomeromodulin, a putative pheromone transporter: cloning,
            characterization, and cellular localization of a novel glycoprotein
            of lateral nasal gland
  JOURNAL   FASEB J 5 (14), 2976-2982 (1991)
   PUBMED   1752363
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.333491.1,
                                           SRR22582424.1682034.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMEA5760433 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-59                JAXUCZ010000003.1  163216695-163216753
            60-339              JAXUCZ010000003.1  163219100-163219379
            340-838             JAXUCZ010000003.1  163221314-163221812
            839-940             JAXUCZ010000003.1  163222129-163222230
            941-1096            JAXUCZ010000003.1  163222808-163222963
            1097-1181           JAXUCZ010000003.1  163223743-163223827
            1182-1239           JAXUCZ010000003.1  163224167-163224224
            1240-1310           JAXUCZ010000003.1  163224901-163224971
            1311-1457           JAXUCZ010000003.1  163226159-163226305
            1458-1580           JAXUCZ010000003.1  163226891-163227013
            1581-1648           JAXUCZ010000003.1  163227174-163227241
            1649-1679           JAXUCZ010000003.1  163227486-163227516
            1680-1740           JAXUCZ010000003.1  163228618-163228678
            1741-1820           JAXUCZ010000003.1  163229377-163229456
            1821-2063           JAXUCZ010000003.1  163230241-163230483
FEATURES             Location/Qualifiers
     source          1..2063
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..2063
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /note="ribosomal protein lateral stalk subunit P1 like 3"
                     /db_xref="GeneID:690507"
                     /db_xref="RGD:1594746"
     exon            1..59
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            60..339
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..1844
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /note="BPI fold containing family B, member 5;
                     vomeromodulin; BPI fold-containing family B member 9"
                     /codon_start=1
                     /product="vomeromodulin precursor"
                     /protein_id="NP_001406639.1"
                     /db_xref="GeneID:690507"
                     /db_xref="RGD:1594746"
                     /translation="MWVLQALAIMLSIQAGVLDLVEVPPEVRSLPVALPAPVNLPAVL
                     PGSPGLNDPAKNRMLPPKRPGAPSRGGKCAPAARYFLSSDKLQASLLSILPPQIEDMV
                     KCDKVNMKGVLGDILATMQDSNLLSILDITSLLQGGGGLGLGGLLGKEGNEDPSKPSS
                     GSKATGGLGQLLPEGLPGKEGLGGLLNLGGGKGSGKGLLNGDGLSNAVKPLDDIVENV
                     DSLKAAVQDKVKSVVPENIKDPFSDLLNMDIQETMLKLKVKQVKVGSTDINMGADGIK
                     VLSEVTADVEGEGLLGPVFTLLQFQSVMDVTMNIAVSSNNTQCVNLDVQDTHMHVKEM
                     NIQLLQTVTETVPLPTSLPLNDIIPIVLTAKMNENLEKSDSCGIVLSDFNDCKNTTGL
                     FGYQVHTARISPKGLSIDYCVKANIDNKTVPVPGGRLPPDPKNANVSITIASSALRTL
                     VKYVAKQSSVQMNDLEAQITYIAFAPQENNMLRLLYKVDITKDSQPYATGETKLFISH
                     ASKILNSKLVPDVKLTRSEHSVVPPETKEEVEGIMAEVTRKAWSRFNELYKKMSIPDG
                     VSSNTLTNSDVKLLRSNDLQAAS"
     exon            340..838
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            839..940
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1096
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1097..1181
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1182..1239
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1310
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1311..1457
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1458..1580
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1581..1648
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1649..1679
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1680..1740
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1741..1820
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
     exon            1821..2063
                     /gene="Rplp1l3"
                     /gene_synonym="Bpifb5; Bpifb9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcagaagca acagcaggag aagcagcttc tgaagacaaa accttcaaca aggagcaagg
       61 tttcagccac aaagatgtgg gttctccagg ccttggccat catgttgagc atccaagcag
      121 gagtacttga cctggtggaa gtgccccccg aggtgcgcag tcttcctgtt gctcttcctg
      181 ctccggtcaa tctccctgca gttctcccag gttctccagg cctcaatgat ccagccaaaa
      241 atcgcatgct acctcccaaa aggcctggag ctccttccag aggtggaaag tgtgcacctg
      301 cagccagata cttcctctcc agtgacaaac tccaggcctc cctcctgagc atactgcccc
      361 cacagattga ggacatggtg aagtgtgata aagttaacat gaaaggcgtg cttggggata
      421 tcttagccac gatgcaggac tctaacctgc tctccatctt agatatcact tccctcctgc
      481 aagggggagg agggcttggc cttggtggac tcctaggcaa agaaggtaat gaggatccct
      541 caaagccctc atcaggatcc aaggccactg gtggccttgg ccagctactc ccagagggcc
      601 tcccaggcaa ggaaggcctg ggcggcttac taaaccttgg tggaggcaaa ggctctggaa
      661 aaggactcct gaatggggat gggctctcca atgccgtgaa gcctctggat gacatagttg
      721 aaaatgtgga cagtctgaaa gctgctgttc aggacaaagt gaagagtgtg gtcccagaaa
      781 acatcaagga tccattttca gatctgctca acatggatat ccaagaaact atgctcaaat
      841 taaaggtgaa acaagtaaaa gtgggcagca cggatataaa catgggagct gatgggatca
      901 aagttctctc cgaagttact gccgacgtag aaggagaagg cttgcttggg ccagtcttca
      961 ccctattgca gtttcaatct gtcatggatg taacaatgaa cattgctgtt tcctccaaca
     1021 acacccagtg cgtcaacctt gatgtccaag acacccacat gcatgtcaag gaaatgaaca
     1081 tccagttact acagactgtc acagaaactg ttcctctgcc tacgtctctg cccttgaatg
     1141 acatcatccc aatagtgctg acagcaaaaa tgaatgaaaa tctggaaaaa tccgactctt
     1201 gtggtatcgt cctcagtgac ttcaatgact gcaagaacac tactggctta ttcggttacc
     1261 aagttcacac tgccaggatc tctcccaaag gactttctat cgactactgc gttaaagcca
     1321 atatagacaa caaaacagta cccgtgcctg gaggtcggct gcctccagat cccaaaaacg
     1381 ccaacgtgtc cataaccatt gcctcctcag cactgaggac acttgtgaaa tacgtggcca
     1441 aacagagctc tgttcagatg aatgacctgg aagcacaaat cacctatata gcctttgccc
     1501 cccaggaaaa caatatgctc agattgctgt ataaggttga cataacaaag gacagccagc
     1561 cctatgccac tggggaaacg aaattattca tctcccatgc cagcaagatt ttaaattcta
     1621 aactggtacc agacgtcaaa ctcacaaggt ctgagcacag tgtggtgccc cctgagacta
     1681 aggaagaagt agaaggcatt atggctgaag tcacaaggaa ggcctggtcc agattcaatg
     1741 agctgtataa aaagatgagt attccggacg gagtgtcttc aaatactcta acgaactccg
     1801 atgtcaaatt gctgagatca aatgaccttc aggcagcaag ctgaagccag cactactgaa
     1861 cccaaagtac tgaacgacag caaaaccccc tgcaaattct tcccatgccc cttgcagccc
     1921 atccttatga ttcattagac aatagcaatg gtctcctggc atgcccaggt cctctgcctt
     1981 gagtgacaag gacaagaaga acagttggag gaaatgggca gtgctgtaat cagctcctta
     2041 ataaacactc ccttcatgca aaa
//
