LOCUS       XM_039113355            3764 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Alpha-1-antitrypsin-related
            protein precursor (LOC690319), transcript variant X1, mRNA.
ACCESSION   XM_039113355
VERSION     XM_039113355.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113355.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3764
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3764
                     /gene="LOC690319"
                     /note="similar to Alpha-1-antitrypsin-related protein
                     precursor; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 13 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:690319"
                     /db_xref="RGD:1597369"
     CDS             2412..3665
                     /gene="LOC690319"
                     /codon_start=1
                     /product="alpha-1-antiproteinase-like"
                     /protein_id="XP_038969283.1"
                     /db_xref="GeneID:690319"
                     /db_xref="RGD:1597369"
                     /translation="MPSSVSQGVLLLAGLCCLFSGSQPQDPLEMDVDEHDHDHKEHLL
                     CYRVSYIIIQITFTLYHKSDSWSKQTNVLFSPLSIIASSLMLSLGAKNNTHDQILEGL
                     NFNLTETPENFIHECFQQLTYILHLPDHTPQLTMDSSLFTDQKLKLMDKFVEDVRRLY
                     HSKVIALNFKDTQRAQNQINEYVEGETHGKIGGLVKEMEADTDFALMNYIFFQGKWYD
                     DFEVERIVEQDFHVNSDTTVKVPMIHRRGRFFLYRDLDLSCWVMVQHYMGDATAFFML
                     PDQGKVQELEKTLNQRHFENILQLIDIRTADLYFPRLSIATTYDLKTILSTLGITEVF
                     SKEADLSGVTQDAPLKLGKAVHKTVLTFEDDVTVPTRNTSWSKRDSPQNFSIHFNRPF
                     LFVIKDEYTNCPLFVGKVVNPVTND"
ORIGIN      
        1 cacaggttga cctgggcttc tttgcttaac cacatgcttt acctgatgag ctagggtcag
       61 gaagaatgtt tccaggctcc cattcccttt tccagtataa ataccaaagg aataaatctc
      121 ttggcttctc actaatactc aactgtttaa ttgacctatt ggggatgcgt ggccacacct
      181 agcttgttag ggttgtcagg gttccagctc taaatctaaa aattcccaag cgaatcagga
      241 aaaagcacac attttggata tcagctgctc acagcaagct gaccccaaat ggttaagacc
      301 tggaaggtgc cacacagcta ctgaagtgac agcatctgag gggatctttc ttgactttcc
      361 acttcagcag gcttccacag cttttctacc tcgacccagg aaagccaaga agtgagaatt
      421 taagctttgt tttagagtct caggaaagtt taacccttgg taaatttctt cctacttcag
      481 gcacctcagg tttaaaggct cctttgagct acatgagtta tttttacacc attttgatga
      541 cttattagag ttctgctgag cctttcccat tttgttgaac ccctacacta tatggtagct
      601 cttagctatc cagaagccct tttgggcaag gttgactttc tgttggataa cttgtgcatc
      661 gctacctact ggggaagatt gatatgtgcc tttggggggt ctttatgaag ccatttaagg
      721 ttctgtatgg ggacattgga gacagagaga caagggtgtc caggggctct ccactatgat
      781 ctgtcaaacc atgggggaaa aagagtctgt cctgatgtca tctgagacaa tggcataggt
      841 tcattttctc agatgattaa ataattaaaa gacagaaagg aggagttgag aagtttctta
      901 tttccatttt tattgccaag gcaaccccta taagagaagg catttaattg tggacttgct
      961 cacaattcca gagtgtgagt ggatggccat cattatcgca gggagcatgg cagcaggcag
     1021 gacatgtagc tgagagctta catctgatcc acaaattgaa gacagaggca gaggtggggg
     1081 ttgggaatga gctgcagtgg cttgggcttc tgacaactca aagcccacct ccagtgacac
     1141 ttctccagtg aggtcacacc tcctaatcct tcccaacaag ttccaccaac tgggaaccaa
     1201 agcattcaag tgttttattc aaggtgaaag taagggaaag taaactcctt tggaaaggga
     1261 ggatccagaa tgcgaatgtt ccttttatcc cagccaggga atcagttagt tatgggttcc
     1321 cttccagcgg gctctgtaac agctgttgta tggaaccctt agaatcatgt cttacagaca
     1381 ctagatctca aactgacaaa aggaaatgga cttactacag tttagtcaaa ccaagaagga
     1441 aaagagtcct agttgctcat gatcttttcc atgacgatgt taagacttct ataggcgata
     1501 tgtatatgtg tagtggtttg aatgggaatg gcccccaaag tctcatagat tgaaatgcct
     1561 ggttattagg gagtggcact acctgaatag gattaatagg tgtgggcctc tcagaggaaa
     1621 cagatctatc acttgggaag gactttgagg tttcaaaagc ccaagccagg ccaaatgcta
     1681 tctacatctg cagatccaga tgtggaactc ccagctactt ccccagcacc atgtctacct
     1741 gcatgccacc atgcaccctg acagaatgac aatggaccaa acttctgaaa ctgcaagcca
     1801 gcaaacaatt aaatggcttc ctttatagga gtggctgtgg ccatggtgtc tcttcacagc
     1861 aacatggagt aaggcactac acaacacaag ccaggaaata cattatgtca gcctaagtta
     1921 tcagaatcgt acgtgatctc ttctgggacg gtaagtccat gctactatgg ctggtgtaga
     1981 ggctttgttc tttcccttta cccaacatgg aattcctggg aattaattat ttggggtcca
     2041 ttgcttcaat aatttaataa cgaagtcttt ttcttcaaaa tgtcttgtct cctgtcaggt
     2101 tgggtacagg gtgcacctat tgcctgctct gagctgcagt ttccatggtg atatcttcta
     2161 ttctactttc aggtcatgtg gctctaattg gttgactata acgacagcca ggccctcagg
     2221 tcatagcagt gcacagctca gtcgcataac cagcttcaca atcagcccca ggctctcccc
     2281 aagagtccct accacctccc ctcccctgag accagcttat aagtatccag aaaaaagacc
     2341 tcaagggata gccagtgtta cacacccagc ctgtaacctt cctgttggcc tcagctgact
     2401 ctacgcagac aatgccatcc tctgtctcac agggagtcct tttgctagca ggcctgtgtt
     2461 gccttttctc tggctcccag ccccaagatc ccctggagat ggatgtggat gaacacgacc
     2521 atgaccataa ggagcatctt ctctgctacc gagtctccta catcatcatc cagataacct
     2581 tcaccttgta tcataagtct gatagctggt caaaacaaac caacgtctta ttctccccgc
     2641 tgagtattat tgcttcctct ctgatgctct ccctgggggc aaagaacaac acccatgacc
     2701 agatcctgga gggactgaac ttcaacctca cagaaacacc tgagaatttc atccatgaat
     2761 gctttcagca acttacatat atcctgcatc tgccagacca cacaccgcag ctgacaatgg
     2821 acagcagcct gttcactgac cagaagctga agcttatgga caagttcgtg gaagacgtca
     2881 ggaggctata ccactcaaag gtcattgctc tcaacttcaa ggacacccaa agagcccaaa
     2941 accagatcaa tgagtatgta gagggcgaaa cccatgggaa aataggagga ttggtcaagg
     3001 aaatggaggc agacacagat ttcgccttga tgaattacat cttcttccaa ggcaagtggt
     3061 atgatgattt cgaggttgaa cgcattgtgg aacaggactt ccacgtgaac tcggacacca
     3121 ctgtgaaagt gcccatgatc catcggcggg gccgattttt cttgtatcgc gacttagatc
     3181 tgtcctgctg ggtgatggta cagcattata tgggcgatgc gactgccttc ttcatgttgc
     3241 ccgaccaagg gaaggtgcag gagctagaga agaccttgaa tcaaagacac tttgaaaata
     3301 tcttacagct cattgacata aggactgcag atttgtactt tcccagattg tctatagcca
     3361 caacctatga tctgaagacc atcctgagca cactgggcat caccgaggtc ttcagcaagg
     3421 aggctgacct ctcaggggtc acacaggatg ctcccctgaa gctcggcaag gctgtgcaca
     3481 agactgtact gacctttgaa gatgatgtga cagtacctac aaggaacacc agttggagta
     3541 agagggactc gcctcaaaac ttttcaatcc atttcaacag gcccttctta tttgtcatta
     3601 aagatgaata caccaattgc cccctcttcg tgggaaaagt ggtaaatccc gtaacaaatg
     3661 attgatttca aaatccagtc accctcacca ccctgttcca gctgtgtcct cttcttgctg
     3721 acattaaacg tgggatagtt tcactcatgc ctgagtgcaa ccag
//
