LOCUS       XM_008759277            3681 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hypothetical protein LOC690114
            (LOC690114), transcript variant X1, mRNA.
ACCESSION   XM_008759277
VERSION     XM_008759277.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008759277.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008759277.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3681
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3681
                     /gene="LOC690114"
                     /note="hypothetical protein LOC690114; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:690114"
                     /db_xref="RGD:1584053"
     CDS             1031..3547
                     /gene="LOC690114"
                     /codon_start=1
                     /product="uncharacterized protein C2orf78 homolog isoform
                     X1"
                     /protein_id="XP_008757499.1"
                     /db_xref="GeneID:690114"
                     /db_xref="RGD:1584053"
                     /translation="MSENVQSFPFFGTESAPQPLNNFTPSGRVCNISRVSTPAVSLAW
                     VLPPTTSTSLQLIAGRAYLNPQASTTMLVELTDQRQNSTSALFYPGALKWDLTESKGN
                     TTITDQDTTLSSLSVTAQWDESLVPNTTLPFSPTLFTNFVQVTPPQVANREYSLALPY
                     QEGSQTYYYNYNSLGPLMPGELGQCLQPYGSVSYPASEECAPQPEVGVVEKEIQPRNL
                     QIPLSTSDLSRSTSVQNTPDTSLLVVDTETFPGLPPSGQTLCLLESPELCTISTEVFQ
                     MRTPPVHGHGSLAGPICCPSEILALPPAPGPEQRENGNMHEVKAELSKPPDAYVGTKE
                     NQDPSHLPLVDYTDTRRLRQKSASDSASLGGIGMGLEERGELENESGSSINFEDIATL
                     EEDNDFPQLFKTLNDIDQDPLLQNWGVMSSPSEKVRKNDLNASDQLDGAPQAKIQYQD
                     LVEGERAMGSTGDKDGTIDKITKHLEGKAPKVAPSRHSKGRKLGQEGPSGPENNSKKT
                     DELKQSRKRVKAEEKPTVPKTKRKRNPPELSQTSFKKPRTHLGMHMLESVQIFHPLGK
                     KNEKKTGISSFRGLQTFTSNKPGPATPTLLDMPHGGQGFDRSPGKVPRSETSAHKECP
                     SPSKNKMPTAGKVRLVPLPFPTLDQPQARPVSRKPLPLASHRPTAAYPVQPHSHSAHP
                     CQLAPVNTSLMSSAKPALPISSSATRPNVGKTVQSRSVPPLAYMRPVPYRVPSHASFQ
                     RELVSAARNKAPSPPKPQTQYQLQDFSCQSIPWREVDILGPVISQPITKEQRPEREAM
                     KRRAQQERENAAKYSCSGKLQLFLHREKDMEISQYYGYAV"
ORIGIN      
        1 ggcaaagaga gaaggcagcc agcttacaac catgaaacta aaaacaggga ggcaaagaca
       61 agaagaatgt ccccgagtct gagaccgtat ggtgatatca gcacggtgag atccagaacg
      121 taagccacag agaaaagcct atctcaggga agaacccttc acaagcatct gcctgattaa
      181 atgaagacca ctgcttctgg aagttcagtg atatcaccaa ctatataaga acgcagggtc
      241 aagctggccc aaggatcaaa gcctacacag agaggagaga agagagatgt aaggtcaact
      301 ggggtcagaa caactgaaaa aaaggactct tggagaagga actgaaagag gagtcttagc
      361 attcataatc tccacaaccc tgccctttat acaatcaaaa tggagcccct gatctcttcc
      421 tttggtcata gacagatgct gacagctcgc aacgcagatc aactgagatg gtttctcaac
      481 tacattgccc caacccatat gccgctctcc ttccttctaa agagttatct gggtatacaa
      541 tggacactga agggatataa tcttttggaa tgttacacat catatgcaca ttataaacac
      601 ctccatcaat gaaccttatg aaaaagactg ccatgatctc aaaagcttaa agtcatggca
      661 agtcctgtca agccaagatt aactctttga ccatcacagg cctcaggctt catggatgaa
      721 gctggtcttc tcaattcttc tccactcaat cctgtcttgt agctcagaat ctgaccttcc
      781 aattggctac ttattgattt atgacatcat tctcccaccc agcctatcag tacctggtag
      841 aatccaggtt tccatggagc tgcctgtaaa caaatttgga tcatcacggt ttacctgtga
      901 ccagtgacca gttgactctg tttaatgctg gacacactcg cgggtttggt caacgatcag
      961 acaaaaacaa ccatttatcc tgctctgttc tggtgtggat tactgttact tctccccgta
     1021 ccacacaatc atgtcagaaa atgtccaaag ttttcctttc tttggaacag aaagtgctcc
     1081 tcagccgctg aacaacttca caccctcagg aagggtgtgc aacatctcta gggtttccac
     1141 ccctgctgtg agtttagcct gggtcctgcc gccaaccacc agcacttctc tccagctgat
     1201 tgcgggcaga gcctacctca acccacaggc cagcacgacc atgctggtgg agctgactga
     1261 ccagagacag aactcaacct ctgcactctt ctatccaggt gctctcaagt gggatctcac
     1321 agaaagtaaa ggcaatacga ctatcactga ccaggacact acactctcct ccctgtctgt
     1381 gacagcccaa tgggatgaaa gtttagttcc caataccaca ctccctttct ctccaacact
     1441 tttcaccaac tttgtccagg tcacaccacc tcaggtggca aatcgggaat acagcctggc
     1501 acttccctac caggagggca gccagacgta ctactacaac tacaatagcc tgggccctct
     1561 gatgcccgga gagctaggac agtgtctgca gccctacggc tctgtgtcct accctgcgag
     1621 tgaggagtgt gcccctcaac cagaggtggg ggtggtggaa aaggagattc agccacggaa
     1681 tctccaaata ccactctcca cctctgacct ctcccgttcc acatctgtgc aaaatacgcc
     1741 agacaccagt cttctggtgg tggacacgga gacgttccca ggattgccgc cttcaggcca
     1801 gacactctgt ctgttggaga gtccagaact ctgcactatt tccaccgaag ttttccagat
     1861 gaggacacca cctgtccatg ggcacgggtc attggcaggc cccatctgct gtccttcaga
     1921 aatcctggcc ttgcctcccg ctccaggacc ggaacaaaga gagaacggaa acatgcatga
     1981 ggtgaaagct gaactgtcaa agcctccgga tgcctatgtg ggcactaaag aaaaccaaga
     2041 cccatcacac cttcctttag tggactacac tgatacaaga agactgagac agaagtctgc
     2101 ttctgacagt gccagcttgg gaggcatcgg catgggtctg gaagagagag gggagctgga
     2161 aaatgagagt ggatccagca tcaactttga agacatcgct acactcgagg aagataatga
     2221 ctttccccaa cttttcaaaa ccctcaacga catagaccag gaccctctcc ttcagaactg
     2281 gggagtcatg agcagcccct ctgaaaaggt gaggaagaat gacctaaacg cctcagacca
     2341 gcttgatgga gctcctcagg ccaaaatcca gtaccaggac ctggtagagg gagagagggc
     2401 tatgggcagt acgggggaca aggacgggac tattgacaaa atcacaaagc atctggaggg
     2461 caaagctccc aaagtggccc ctagcaggca cagcaaaggt agaaaactgg ggcaagaagg
     2521 accaagtgga ccagagaaca actctaagaa aacagacgag cttaagcagt ccaggaaaag
     2581 agtcaaagca gaagagaagc ccaccgtccc caagaccaag aggaagagga atccacctga
     2641 actcagtcaa accagcttta agaagcctcg aacccacctt ggcatgcaca tgctggagtc
     2701 cgtgcagatc tttcacccac tggggaagaa gaatgagaag aaaactggca tctcctcctt
     2761 ccggggtctg caaaccttca ctagcaacaa gccaggccca gccactccaa cactgctgga
     2821 tatgccacat gggggccagg gctttgacag aagcccaggc aaagttccaa gatcagagac
     2881 cagtgctcac aaggagtgtc catctccatc caagaacaag atgcccacag ctgggaaggt
     2941 cagattagta cctctgccat tcccaaccct ggaccagcct caagccagac ctgtttctag
     3001 aaagcccctc cctctggctt cgcacaggcc cactgcagct taccctgtgc agcctcactc
     3061 ccactcagct catccatgcc aactagctcc tgttaacaca tctctgatgt cctctgccaa
     3121 gccagctctg ccaatttcct ccagtgccac acgacctaat gtaggcaaaa ccgtccagtc
     3181 taggtctgtg cctccgttgg cctacatgag gcctgtgcct tacagagtac catctcatgc
     3241 ttccttccag agagagctcg tttctgctgc caggaacaag gcaccatcac cacccaaacc
     3301 tcagacccag tatcaactgc aagacttcag ctgccaatcg attccatgga gggaagttga
     3361 tattctggga ccagtcatct cacagcccat cacgaaagag cagaggccag agagggaggc
     3421 catgaagagg cgggcccaac aggagcgtga gaatgctgcc aagtacagct gttctgggaa
     3481 actgcagctt ttccttcaca gggagaagga tatggaaatt tctcaatatt atgggtacgc
     3541 agtgtaagag ctggccattg taacatagtg cttttgatgt gcacagtaag aggtacaaac
     3601 acagatacag atataaacat aggactttaa ggatcatatg aatgtgtaga tgcataagta
     3661 aatgtgtagc taagtagatg a
//
