LOCUS       NM_001402575            1772 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2, member G like 1
            (Clec2gl1), mRNA.
ACCESSION   NM_001402575 XM_017593049
VERSION     NM_001402575.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Kveberg,L., Dai,K.Z., Westgaard,I.H., Daws,M.R., Fossum,S.,
            Naper,C. and Vaage,J.T.
  TITLE     Two major groups of rat NKR-P1 receptors can be distinguished based
            on chromosomal localization, phylogenetic analysis and Clr ligand
            binding
  JOURNAL   Eur J Immunol 39 (2), 541-551 (2009)
   PUBMED   19130483
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Mar 18, 2022 this sequence version replaced XM_017593049.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.6676.1, EU128749.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-196               JAXUCZ010000004.1  163992371-163992566
            197-286             JAXUCZ010000004.1  164010101-164010190
            287-412             JAXUCZ010000004.1  164020103-164020228
            413-591             JAXUCZ010000004.1  164021146-164021324
            592-698             JAXUCZ010000004.1  164021884-164021990
            699-1772            JAXUCZ010000004.1  164024814-164025887
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1772
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /note="C-type lectin domain family 2, member G like 1"
                     /db_xref="GeneID:689800"
                     /db_xref="RGD:1587580"
     exon            1..196
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..825
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /note="C-type lectin domain family 2 member D11"
                     /codon_start=1
                     /product="C-type lectin domain family 2 protein"
                     /protein_id="NP_001389504.1"
                     /db_xref="GeneID:689800"
                     /db_xref="RGD:1587580"
                     /translation="MRSSRDEDSMRLMKTEVTTTDFLEEGETVEMRSSRDEDSMRLMK
                     TEDTTTDFLKEGETGEMLHGNCLRIFSPESPAKLYCCYAVILVLTVAVVALSVALSVK
                     KTPQISNINAYAACPRNWIGVGNKCFYFSEYASNWTFSQDFCKAQESQLARFDNQEEL
                     NFVKRYKGSSNYWIGLHRESSEHPWKWTDNTEYNNLVSIRGDELLGFLSDSGISSSRN
                     YIKRNWICSKPNNYTSQCK"
     exon            197..286
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /inference="alignment:Splign:2.1.0"
     exon            287..412
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /inference="alignment:Splign:2.1.0"
     exon            413..591
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /inference="alignment:Splign:2.1.0"
     exon            592..698
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /inference="alignment:Splign:2.1.0"
     exon            699..1772
                     /gene="Clec2gl1"
                     /gene_synonym="AABR07062138.2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtaagaataa acaagtcaca aagtgaacaa gtttgaactt ccttaaatgg ccttgtctgg
       61 aaacgcccag gattagacaa aactccctgt ccggtttcat ttgcagttga gatgagatcc
      121 tcccgggatg aagattctat gagattgatg aagacagaag tcactaccac agacttccta
      181 gaagagggag aaacagttga gatgagatcc tcacgggatg aagattctat gagattgatg
      241 aagacagaag acactaccac agacttccta aaagagggag aaacaggtga aatgctccat
      301 ggaaattgtc tcagaatctt ctcccctgaa tctcctgcta agctttactg ctgttatgca
      361 gtgatcctag tcctcactgt agctgtagtt gctctttctg ttgctttgtc agtaaaaaag
      421 acaccacaga tctcaaacat aaatgcctac gctgcttgcc caagaaactg gattggagtt
      481 ggaaataaat gcttttattt ttctgaatat gcaagtaact ggacattcag ccaggacttc
      541 tgcaaggcac aagagtccca actagctcga tttgacaacc aggaggagct gaattttgtg
      601 aagagataca aggggtcatc taactactgg attggcttgc acagagagtc ctcagagcac
      661 ccttggaagt ggacagataa cactgagtat aacaacttgg tttccatccg aggagatgaa
      721 ctacttggtt tcctgagtga cagtgggatc agcagtagca ggaactacat aaaaaggaat
      781 tggatttgta gcaagcccaa caactacacc tcacagtgca agtagttttg tatcctgggt
      841 agagagtata tcatagcaat catgaggaac ataacatctt ctctacagta gctgcctcat
      901 taacaatctg ctaaaataat aagttcataa tgtgtggtga catcaaagat gacaactgtg
      961 gacaagtttg ctttggaggt catatcttaa acataaacta aatcacagca gtattagtaa
     1021 cctctacctt tttctctttc tcttttaaaa attatttcat ttatttatat tccaaattct
     1081 gtcccctcct ggcccccctt ccagaattct tcacttcata cccctcccat ttacttctga
     1141 ggagatgttc tccccctatt gtcctatgcc caccctaccc caccctgggc attccctttc
     1201 tctggctcat tagttctcta ctggattagg tgcatcctct cccactgagg acagataagg
     1261 cagtcctctg ctacatatgt cctggaggcc atggaccagc caggtacctc tttggttggt
     1321 agcttagtct ctgggagctc ctaggattcc aggttagttg gcactgctat tcttcctatg
     1381 gagttgccat ctcttcagct ctctcaatcc ttcccctaac tcttctatag gtgtccccaa
     1441 cctcagccca gtgattgcct gtgaatatct gcatctgtct tagtcagctg ttggtagagc
     1501 ctcagaagat gcattggtct ggctgttacg aagtcaaaca gtcctctgag aggggagtga
     1561 ggcttattat aggaaagacg aaaaaacaga tgcaataatg ggagggctgc aggtcaatac
     1621 cactccagcc ctgagtgtat ttctcacagc cttctttttt tttttttttt ttgtttttgt
     1681 ttttgttttt gttttagttt ttgtttttgt tttttttatt tattttttat taacttgagt
     1741 atttcttata tacatttcga gtgttattcc ct
//
