LOCUS       NM_001101019             789 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Rattus norvegicus C-type lectin domain family 2 member D2 like 1
            (Clec2d2l1), mRNA.
ACCESSION   NM_001101019 XM_001071896
VERSION     NM_001101019.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Kveberg,L., Dai,K.Z., Westgaard,I.H., Daws,M.R., Fossum,S.,
            Naper,C. and Vaage,J.T.
  TITLE     Two major groups of rat NKR-P1 receptors can be distinguished based
            on chromosomal localization, phylogenetic analysis and Clr ligand
            binding
  JOURNAL   Eur J Immunol 39 (2), 541-551 (2009)
   PUBMED   19130483
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Voigt,S., Mesci,A., Ettinger,J., Fine,J.H., Chen,P., Chou,W. and
            Carlyle,J.R.
  TITLE     Cytomegalovirus evasion of innate immunity by subversion of the
            NKR-P1B:Clr-b missing-self axis
  JOURNAL   Immunity 26 (5), 617-627 (2007)
   PUBMED   17462921
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from FJ404472.1.
            
            On Jul 20, 2012 this sequence version replaced NM_001101019.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FJ404472.1, EF100687.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN09345330, SAMN09345331
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="DA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..789
                     /gene="Clec2d2l1"
                     /gene_synonym="Clec2d3; RGD1563033"
                     /note="C-type lectin domain family 2 member D2 like 1"
                     /db_xref="GeneID:689757"
                     /db_xref="RGD:1588731"
     CDS             1..789
                     /gene="Clec2d2l1"
                     /gene_synonym="Clec2d3; RGD1563033"
                     /codon_start=1
                     /product="C-type lectin domain family 2 member D3"
                     /protein_id="NP_001094489.2"
                     /db_xref="GeneID:689757"
                     /db_xref="RGD:1588731"
                     /translation="MSPLNPRPYSMSSSAHLQDAPPLLSGTLTQNEGQTSLRQSSSCG
                     PSAASASESLSGYTESRIPHSKVRQGKGLRSIFPESRVKRYCCYGGVITVVAIAIVVP
                     LSVTLSVKQMEQTSINNTFAASINNTSAASINNTSAACPSNWTEYGNKCFYFSEYTSN
                     WTFSKDFCAAQGAELARFDTEEELNFLKRYKGSSGYWIGLHRESSEHPWKWTDNTQYN
                     NLVPIRGDGQCGFLSDQLNISSSRVYVERPWICSKPKKYISQSQ"
     exon            1..193
                     /gene="Clec2d2l1"
                     /gene_synonym="Clec2d3; RGD1563033"
                     /inference="alignment:Splign:2.1.0"
     exon            194..325
                     /gene="Clec2d2l1"
                     /gene_synonym="Clec2d3; RGD1563033"
                     /inference="alignment:Splign:2.1.0"
     exon            326..552
                     /gene="Clec2d2l1"
                     /gene_synonym="Clec2d3; RGD1563033"
                     /inference="alignment:Splign:2.1.0"
     exon            553..659
                     /gene="Clec2d2l1"
                     /gene_synonym="Clec2d3; RGD1563033"
                     /inference="alignment:Splign:2.1.0"
     exon            660..789
                     /gene="Clec2d2l1"
                     /gene_synonym="Clec2d3; RGD1563033"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtctccct tgaatcctag gccatactca atgtcgtcca gtgcacacct acaggatgct
       61 cccccactcc tctccgggac ccttacacag aatgaaggac agacctcctt gaggcagagt
      121 agcagctgtg gtccgtctgc tgcctctgcc tctgagtcat tgtcaggtta caccgagtca
      181 agaattcctc acagtaaagt gcgccaagga aagggtctca gaagcatctt ccctgagtct
      241 cgtgttaagc gttactgctg ctatggagga gtgatcacag tcgttgctat agctatagtt
      301 gttcctcttt ctgttacttt gtcagtaaaa cagatggaac aaacctcaat caataatacc
      361 ttcgctgcct caatcaataa tacctccgct gcctcaatca ataatacctc tgctgcttgc
      421 ccgagcaact ggactgaata tggtaataaa tgtttttatt tttctgaata tacaagtaac
      481 tggacattca gcaaggactt ctgcgcggca caaggggccg agctagcacg atttgacacc
      541 gaggaggagc tgaatttcct aaagagatac aaagggagtt cgggttactg gatcggtctg
      601 cacagagagt catcagagca cccttggaag tggacagaca atactcagta taacaacttg
      661 gttcccatcc gaggagatgg acaatgtggc ttcctgagtg accagctcaa catcagcagt
      721 agcagggtct atgtagaaag gccttggatt tgtagcaagc ccaaaaaata catctcacag
      781 tcccagtag
//
