LOCUS       XM_039103654            3746 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to GTPase activating protein
            testicular GAP1 (LOC689629), mRNA.
ACCESSION   XM_039103654
VERSION     XM_039103654.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103654.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3746
                     /gene="LOC689629"
                     /note="similar to GTPase activating protein testicular
                     GAP1; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:689629"
                     /db_xref="RGD:1589949"
     CDS             192..3461
                     /gene="LOC689629"
                     /codon_start=1
                     /product="uncharacterized protein LOC689629"
                     /protein_id="XP_038959582.1"
                     /db_xref="GeneID:689629"
                     /db_xref="RGD:1589949"
                     /translation="MEMIEEEDVGEKNQAMVCQGAVVFRRGWKRNKRYLTLLSDVLVV
                     STKLNKKKFKVKHVIPLTYLWIGDETDIFRTDNSPASKTIYLYWPMGNAVVTFRSMEE
                     TIWWNFFLQRSIRDAKKQNKIDLSLQISTEDIAHCDTPLYVKATNFDTVNDIMSKLLP
                     MMRKHNIEDFQLWFCPRPGETPRALQGNEYPHDIIMINIQKNFSSRDLRHFTSFPSLP
                     GLIMKYLNSDAQGQFILRPRNTARSQQQKNMKEKTLKKQRTSKSSWWHRSYEPHPDQV
                     CNTPKVNNGGKLFGRELSSICKDGNLPLAILDMLSLLKREGPTTEGVFIIRPSITMCQ
                     TIKDKLDSEEEVDMNKLSVHVVSWIFKDFLQNIEGSLMTSKLYDEWIAVTKKVDDEEK
                     LAAVQSLLDKLPSANAVLLRQIFQILYEIKSNSSVNEMSSYNLSVGIAPCLLFMPSYC
                     NNGGTNDIPIKISLVTFMIENTPKIFGEDVVAVSYETSLTHPPGAKSSCSPDTSANTR
                     NVKQTNRGLSSCPTERTCTPDYNALPGSPAAPLPCEDILDSEKSKGNVYTNQAIPLLS
                     LPQAPKKCLFGKSLVRIFEGKSLPTPIFDMFSIIAEKGQDSDHIFNTVSEISHWSLRD
                     RIENDEHINWQEEDVLVIASVLMDFISNIKGSLLTSDLYEDWLTIMDEGTLFRRITAI
                     QRLTRQMPEQNFLLLQYVICVLVMISDSSMNNLDSHTLSLRIAPSVLCGQPASDALYG
                     DSASRKISVIKMMIDHYLEIFGNDNLFSKHIDERSDDLKMYIDLIFSKGKSPIMKKVI
                     VGPNGTTCSNDEKVNISNAALQEEFPTGSEKHEHDVSTIPSVLSPNRLRPRKKSLFGQ
                     PLTSIFEDNKLPTSILDMISIIAAKGQSSDQLFRTISENSQCSLRDKIDTEQPINWND
                     ECVLVVASVLKDFITNIDGSLLTYNLYENWLTVPEEETLAGQIIAIQSLLQQIPDPNF
                     ILLKYLICLLVIIKDSPMNKLDTKRLSIRLAPHVLWGWTSSDSLFGKVVSRKISLMEI
                     MIDNYIQIFENDNRYCIHNEKRSAVINKSADIINSDVKSTIMNKIIGGLNRKTCYNNE
                     I"
ORIGIN      
        1 tcacaatggt tcttcagcct gacaactaca gaatcctcag acttcagttg ctttctagcc
       61 actgcagtaa ccagtttggt gtttagcagc aggaaggcga acgaaaattt cacattgttt
      121 gataaattct tcattgcagg ctcgtctgaa aaggtggagc cctgtatgaa gataattctt
      181 tttttttcaa catggaaatg attgaggagg aagatgtggg agaaaaaaat caagccatgg
      241 tttgccaagg agccgtggtt ttccgaagag gatggaaaag aaataaacga tatctcacac
      301 tgctcagtga tgttttggtt gtctccacta aactaaataa gaagaagttt aaagtaaagc
      361 atgtcattcc attgacttac ctgtggattg gagatgaaac agacatattc aggacagaca
      421 acagccctgc ttccaaaacc atttacctat attggccaat gggaaatgct gttgtcacct
      481 ttcgttccat ggaagagacc atttggtgga acttctttct acaaagatcc atacgagatg
      541 cgaagaagca gaacaaaata gatttatccc tgcagatatc cactgaggac attgcacact
      601 gtgacactcc tctatatgta aaagctacaa actttgatac agtgaatgac ataatgagca
      661 agttactacc aatgatgaga aaacataaca ttgaagattt tcaactgtgg ttctgtcctc
      721 gccctgggga aactccaaga gcactccaag gaaatgagta tccacatgac attataatga
      781 taaatattca aaagaacttc agttcacggg acttaaggca ttttacatct ttcccttccc
      841 tacctgggct gatcatgaaa tatctaaact ctgatgcaca agggcaattc atcttaaggc
      901 ccagaaacac agccagaagc caacagcaaa aaaatatgaa ggaaaagact cttaagaaac
      961 aaagaacttc taaatcatcg tggtggcaca ggagctatga gccccaccca gaccaagtat
     1021 gcaacacccc aaaagttaat aatggaggaa aactgtttgg aagagaactc agttccattt
     1081 gtaaggatgg caacctgccc ttggcaattc tggacatgct gtccctacta aaaagggaag
     1141 ggcccacaac cgagggtgtc tttataatac gtccgagtat aacaatgtgc caaacaataa
     1201 aggacaaatt ggattcagag gaagaggtgg atatgaacaa gctatcagtg catgtcgtgt
     1261 cgtggatctt taaggacttt ctacaaaaca ttgaaggaag tctgatgact tcaaaactgt
     1321 atgatgagtg gattgctgta accaaaaaag tcgatgacga agagaaatta gctgcagtgc
     1381 agagcctttt agataaactg ccatctgcaa atgctgtgct tctgaggcaa atttttcaaa
     1441 tattatatga aataaaaagt aattcttctg ttaatgagat gtcttcttac aatctatctg
     1501 ttgggatagc tccatgtctc ttattcatgc ccagttactg caataacgga gggacaaatg
     1561 acattcccat aaagatttct ctggtaacat ttatgatcga aaacactcca aaaatttttg
     1621 gagaggacgt ggttgcagtg tcatatgaaa catccctaac tcatcctccc ggagcaaagt
     1681 cctcatgttc ccctgacact tcagcaaata ccagaaacgt gaagcaaacc aatcgtggac
     1741 tcagcagctg ccccactgag aggacatgca ctcctgacta taatgcactg ccaggaagtc
     1801 cagctgcccc tcttccctgt gaagacattc tagattcaga gaaaagtaaa ggaaatgtat
     1861 ataccaacca agcaatacct ttgcttagtc taccacaagc accaaagaaa tgtttgtttg
     1921 gcaaatctct tgtgagaatt tttgaaggca aaagcctgcc tactccaata tttgatatgt
     1981 tttccataat tgcagagaag ggacaagatt ctgatcatat atttaatacg gtatctgaaa
     2041 tttcacactg gtccctgagg gacaggattg aaaatgacga acacataaac tggcaggaag
     2101 aagacgttct agttatagca tccgtattaa tggacttcat tagtaacatt aaaggaagct
     2161 tacttacttc tgatttatat gaagattggc ttaccatcat ggatgaagga actctgtttc
     2221 gaagaattac tgccatccaa agacttacac gtcagatgcc cgaacaaaac ttccttcttc
     2281 tacaatatgt catttgtgta ttagtaatga taagtgactc ttcgatgaat aatttagact
     2341 ctcacacatt atctctccgc atagctccgt ctgtgctatg tggtcagcct gcaagtgacg
     2401 cactatatgg ggattctgcc tcaagaaaga tatctgttat aaaaatgatg attgaccact
     2461 accttgaaat atttggaaat gataatctat tttctaaaca tattgacgaa aggtctgatg
     2521 atctaaagat gtatatagat ttaatcttct ctaagggcaa atctcctatt atgaaaaaag
     2581 tcatagttgg ccccaatggg acaacctgca gtaatgatga aaaagtaaat atttcaaatg
     2641 ctgctctgca ggaagaattt cctacaggtt cagagaaaca tgaacacgat gtatctacca
     2701 ttccctcagt actgtctcca aatcgactac gacctaggaa gaaaagtttg tttggccaac
     2761 ctcttacaag tatttttgaa gacaataagc tgcctacttc aatactagac atgatatcta
     2821 taattgcagc aaaaggacaa agttctgatc aattattcag aactatatct gaaaattccc
     2881 agtgttccct gagggacaag attgacacag aacaacctat caactggaat gacgaatgtg
     2941 tgctggttgt agcttcagtc ttaaaggact ttattacaaa tatagatgga agcctactta
     3001 cttacaattt atatgaaaat tggcttaccg tcccagaaga agaaactctg gctggacaaa
     3061 ttattgccat tcaaagcctt ctacaacaga taccagatcc aaactttata ctactgaaat
     3121 atctcatttg tctattagta ataataaaag actcacccat gaataagctg gatactaaaa
     3181 ggctatcgat ccgccttgct ccacatgtct tatggggttg gacttctagt gactctttat
     3241 ttgggaaagt tgtctcaaga aagatatctc ttatggaaat tatgattgac aactacattc
     3301 aaatatttga aaatgataat agatattgta tccataatga gaaaaggtct gctgtaataa
     3361 ataaatctgc agatatcata aattctgatg tcaaatcaac tattatgaac aaaatcatag
     3421 gtggactcaa tagaaaaacc tgttacaata atgaaattta aatatttcat atgcagctct
     3481 gcagaaaagt cctacaggag aaaacagaac tcctaccaca tataagtggt agaggatgac
     3541 gggaagatgt tctaaggtca ttctattttc atgttcctgt ctacagccca ctaaattgta
     3601 gcagaagata ttgttacaag atcctacttc tgctttatat ttccctatat tagctacaaa
     3661 taattttccc tcattaaact tactttattc tccctattat atattgtttg ctattataat
     3721 aaatgttatt aaattgtttt attgct
//
