LOCUS       XM_006237423            3985 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Transcriptional enhancer
            factor TEF-3 (TEA domain family member 4) (TEAD-4) (ETF-related
            factor 2) (ETFR-2) (TEF-1-related factor 1) (TEF-1-related factor
            FR-19) (RTEF-1) (LOC689519), mRNA.
ACCESSION   XM_006237423
VERSION     XM_006237423.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006237423.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006237423.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3985
                     /gene="LOC689519"
                     /note="similar to Transcriptional enhancer factor TEF-3
                     (TEA domain family member 4) (TEAD-4) (ETF-related factor
                     2) (ETFR-2) (TEF-1-related factor 1) (TEF-1-related factor
                     FR-19) (RTEF-1); Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     62 samples with support for all annotated introns"
                     /db_xref="GeneID:689519"
                     /db_xref="RGD:1591108"
     CDS             419..931
                     /gene="LOC689519"
                     /codon_start=1
                     /product="transcriptional enhancer factor TEF-3-like"
                     /protein_id="XP_006237485.1"
                     /db_xref="GeneID:689519"
                     /db_xref="RGD:1591108"
                     /translation="MPLAAPSQRCWYPPPPLVCNACPPAHLIAATSGSFPFPLLEVSA
                     CLVTDKGERPDFISRNLLGWAWAGGEGILSLCVPGIPQTEFARYENGHYLYRIHRSPL
                     CEYMINFIHKLKHLPEKYMMNSVLENFTILQVVTNRDTQETLLCIAYVFEVSASEHGA
                     QHHIYCLRKE"
ORIGIN      
        1 tgtgcacaga gcaaggtggt aacctcttgg cccgcagtga tcggaattga tggtgttctc
       61 tgcctgggtt gacagtctca tgtcaaacag ctaggtgcca ggcatgacct agaagggacc
      121 tttgctttgg ggtcgcaatc ctggaattgg caggaagcta tcataactgt tagcgacact
      181 gagcactgag gcccacccat gtaacagctg tctgcttggg cgagtagtcc cgtagtggca
      241 gtggacgtgt gcacgtgtgc tgtgttttgt ttcttttggt gctaaagatg gatgccagaa
      301 ctcagtggct cagatttact ttcattaaac gcatcgaggt gcccatgtcg ctatgcagtc
      361 gtcatcccac aggtcatccc tctagctccg gggccaacag catccagcac cgaggttcat
      421 gcccttggcc gctccatctc aaaggtgctg gtaccctccc ccacccctag tgtgcaacgc
      481 ctgccctcct gcccatctca ttgctgctac ttccgggtct tttccttttc ctctcctgga
      541 agtgtctgcc tgtcttgtca ctgacaaagg ggagaggcct gacttcatat ccaggaacct
      601 cctaggatgg gcctgggctg gaggtgaagg gattctaagc ctctgtgtcc ctgggattcc
      661 acagacagag tttgctcgct atgagaatgg tcactatttg taccgcatcc accggtcccc
      721 actctgtgag tacatgatca actttatcca caagctgaag cacttaccag agaagtacat
      781 gatgaacagc gtgctggaga acttcaccat cctgcaggtg gtcaccaacc gagacacaca
      841 ggagaccttg ctgtgtattg catatgtctt cgaagtttca gccagcgaac atggggctca
      901 gcaccacatc tactgcctga ggaaagaatg agagacttgg agagctatgg tgggggaaag
      961 tcaaggaaat ggggacctgg gagggaacct tcagggacag cccccaaatg tgccaggaga
     1021 gccaatcaga gttgctagtt ctttccttac caggagcaaa ctgcctgatc tcgcagtgct
     1081 caacccccaa taaacccaag gagtcaagtt ttttcagagg atctgattta acctgtatga
     1141 acccagaagg gcatgggaga agggggcacc aagaggcaag ctggaagcgt taacctgagg
     1201 tgccccagga tggcccagga accagaaccc cggtggactc agccagccat atcaccttga
     1261 ccaaagctca agacccagtg gtcccttctg agctgataga accccatact ctgctgctgg
     1321 tcacaacagt gactgaggac agatagcacg tgggtcacac acccagagat gctgtgcagg
     1381 acttagtgca cactgtcagt caatcctgcc atcgatactg gagtttcgat atggaagaag
     1441 gtccgcccct acaaaagggg ctggatttag gtgtgactgc aacatagttg ttggactgag
     1501 accctatgaa gagctcctca ggtggctttg ttccttctgc agtgggccca gaagggggca
     1561 gggcctccag actgaagcaa ggcttggagg tagggcattt tgcttcaggg ccagctattc
     1621 caggaccagc atttccagct gcctgacctt gaagggttcc tcagcttctc tattagtccc
     1681 ttttctcctc tgctcagcac tgatgagggg agaaggtttg tacagtacct gagtcttttg
     1741 gtgccagtta aattatccag tcctcagccc cttgcctctc tccctctgga gggcctggat
     1801 ctgttgctcc cctgacctct caaggtgttc tgctgtctgc ttccccagtt ggagccagtt
     1861 gtagtagtct cgagcctcag gaagaaagct ataacctggg catgtgtgta gccaggactc
     1921 aaggatgcat ctgtgaggat gtagcagtgg gcagggcaac attgtgagga tggtacagag
     1981 gtgaggaggc aagggctctg gagtcagtct tggttgactt tggtgtgcaa cctttaaaaa
     2041 aatgttgtgg tgcctcactt accccatctg taaaatgggt ataacattca cctacctcgt
     2101 gtatggacag tgcctcacac agtgctgagt acatccacat gttcaataaa tatgcatcag
     2161 tactaaccat gggaacttca attccagcta aagatccagg ctggagaact atgcactagg
     2221 gtggggtggt ccctgcagca agtgcctatc acagagagga cggatccgag ggtctcaggg
     2281 aagaggtagc atgagggaac aggttatgag aggagggtgg ctaataatta ctggtgttat
     2341 ttctgtggtt ttggtgttgg ggccagggtt tgacacaggc taagcgaaca tgacagtatg
     2401 caaataagcg tatgtgagct gtttggcagc atcttagatg aggaagacag actgagctac
     2461 ccagtctttc tggagcccca agttccctct ccttagcaca aagcaattta acccataccc
     2521 tgctccctac cacgttagga tggtgaccag acacaagcct ccttccttcc tactgtgcca
     2581 ggtagaggtc ctgccatcaa acggggtcag gggtacttga aattctactg caaccctggc
     2641 cttgtgacca ggattcacaa gtccacatgc aggcctgtgt ttgcagtctc cctccccatg
     2701 tccaaatcct agccctggac ccctcctgct gcccaggagc acactcttgg aagcaccagc
     2761 ctcagacatt cagacttcta tggagtcagc ctcctggtac aacattttcc tattggaagc
     2821 aggtcagtcc agatgtttgg gtcccaatgt gggtcgtttt tcctgtgtta agtgacctca
     2881 gtggtctaat ggaaagttac catagaagac tgtcttactg cctctccatt caagtcaaca
     2941 gggcacctcc cttatcccac caagctggta ctgggctgaa aacatttagc tttttaagat
     3001 gaggttttcc tctcttgtct gggctattgt ctccagtgat ccctctgcct cagcttcaca
     3061 aggatctggg actatgggtt ctccccactg agccttgcac tcctattttg aagactgaaa
     3121 aagcagggct cacagagctt tgggaattgg gttctggtgt tggtgtattt tttcctttgc
     3181 tttgtgagtg gttgtttgac ttctgaggtg tggcaggctc tgggaatgtg actatgaaca
     3241 gaatagtcag ggtggctgtg agcttgcctt ggactgaggt gggggtgagg tgtggttggc
     3301 agcaagttaa ggagactcat aggtagtggg cagtgggagg aggtgggtac ccaaagtcag
     3361 cttcacttaa gtggaggccg ctcagtcctg ggttctgcac tgactcctga actgcagaca
     3421 agtggattcg aaggaaggaa cattccaagg gagaattgag aggcctggag caagggaggg
     3481 gacaggtttt ccccagggta cactgactga cctaggttgg acataactct agctaacagg
     3541 ccaggatgga atgcaggcag tttagtcctt tgtgtccccc gcactcccct gtagatgtgc
     3601 actttgggat gctcttagga tgggggtctt aagcaagcga gtacattcct ttgatgctat
     3661 ttttagaaga gagctctaga gcattgggtt tgtacagagg agcagctgga actgttgtgg
     3721 gatgggaacc catccagcct gctcccctgg gcctctgggg gtggaaacta tttgttttct
     3781 ggatctgtcc cacttggcaa ccagtcaaac acaagacaga gtggaggcgg catggctacc
     3841 cgtgtcattg ggcctgtgag atgagcaagg gtccccaaag tcctggggag agagagccct
     3901 ccatcctgtg agtggaaacc ttcttgtgtt atctagttag caggaaatgt cagaaatgga
     3961 tgcagggaca ggtgagaggt ctttt
//
