LOCUS       XM_017602421            2401 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to RNA polymerase II
            elongation factor ELL2 (LOC689396), transcript variant X1, mRNA.
ACCESSION   XM_017602421
VERSION     XM_017602421.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602421.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602421.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2401
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2401
                     /gene="LOC689396"
                     /note="similar to RNA polymerase II elongation factor
                     ELL2; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 ESTs, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:689396"
                     /db_xref="RGD:1593468"
     CDS             103..2007
                     /gene="LOC689396"
                     /codon_start=1
                     /product="RNA polymerase II elongation factor ELL2-like
                     isoform X1"
                     /protein_id="XP_017457910.1"
                     /db_xref="GeneID:689396"
                     /db_xref="RGD:1593468"
                     /translation="MDRYDYVAAFGGKGTGKIMHPEGQMPVTEADNIDPGLVNVSRLP
                     MGISRSIFQASPLYQSNKHPSPSQVSQFQGFQQLNKITPTHSSTDIKAFNFQLSSMSN
                     DSQQEKIGNPQPNISNSRPPFNCLQSIQDKTTVSRSGMSVQMTPERMTEAEEKSSNTW
                     KNIRKSYVQKKVSAQKVPHFVPDQAPERKKTSPLNPAYAIRKSRMINGIHMRSFRDRV
                     IHLLALKDYKKSELLVQLQKDGIKINDSNFLGKILLQVANLNATTLSYTLKDSIFKEV
                     QRDWPGYNKEDKQSLDLVLSRKLHPFHNATEVTHSKETSVISKTDDTSSSKDHFLHLS
                     DIDTLIKNKGGLCSPKSAVQLASNGYVSSEKSMILPCSAAPTKYVTLPLPNSHLPISN
                     SPLLIKSNSNISCAPERSESQYTCDSIHHDGSTIEREMNKCTSSETSSCASVQKKHSM
                     PNEMQHFMPEKFKCAFAKRKTTIPNYITSMKEIPKIDFNKQDEIMESNSNKEVKKAFA
                     DSGKFVTTCGTPEYLSNYSIIVSSDQRQYYEDEFRADYSEYQAMYDKIQISCTPIIDL
                     DSERKGFSPGSKEYQDITKKISIEYQKMRQLNPKFCEEKNKCVFLYNKLIHIKKLIND
                     FDNQKVKSTQ"
ORIGIN      
        1 gttgttagtt acagagcaaa gaactttaag agcagtgtga aggcacacca cagaaaatat
       61 agtgctccag aaagctcata acctagatgg tgacaaagat caatggacag atatgactat
      121 gtggctgcct ttggaggaaa aggaacagga aaaatcatgc acccagaagg acagatgcct
      181 gtgacggagg ccgacaacat agacccaggg ctagtcaatg tcagtaggct gcctatgggg
      241 atttcaaggt caatcttcca ggcaagtcct ctgtaccaga gcaataagca tccatcccct
      301 tctcaagttt ctcagtttca aggatttcaa cagcttaaca aaatcacacc aacccattca
      361 tctacagaca taaaagcctt taactttcaa ttatctagta tgagtaatga tagccaacaa
      421 gagaaaattg gaaaccccca accaaatatc tcaaactctc gcccaccatt caattgcctg
      481 caatcaattc aagacaaaac gacagtaagt agatctggga tgtctgttca gatgactcca
      541 gagagaatga cagaagcaga agagaaatcc agcaacacat ggaagaacat tagaaaatca
      601 tatgtacaga aaaaagtatc agctcaaaaa gtgcctcatt ttgttcctga tcaagcacct
      661 gagaggaaaa aaacaagccc cctcaatcct gcatatgcca tccgaaagtc acgtatgatt
      721 aatggtatcc atatgcggtc atttagggat agggtgattc acctactggc actgaaagac
      781 tacaagaaat cagaacttct tgttcaattg caaaaagatg gtatcaaaat aaatgactcc
      841 aattttcttg gaaaaattct gctgcaggtg gctaatctga atgccactac tttgtcgtat
      901 actttaaagg acagtatctt caaagaggtc cagagagatt ggcctggtta taataaggaa
      961 gacaagcagt cactggattt ggtactttcc agaaaactgc atccatttca caatgctacc
     1021 gaggtcaccc atagcaaaga aacatctgta atttctaaaa cagatgatac atcatcctca
     1081 aaggatcatt ttcttcattt atctgatatt gatactttaa ttaaaaacaa aggaggactc
     1141 tgttccccta aatctgctgt gcagttagca tcaaacggct atgtaagcag tgagaagtct
     1201 atgattctgc catgctctgc agctcctacc aaatatgtta ctttaccact gcctaactct
     1261 cacctgccaa tttcgaattc accactgctc atcaaatcca atagtaatat ttcctgtgct
     1321 ccagaaagat ctgagagtca atacacatgt gacagcatcc accatgatgg cagcacaatt
     1381 gaaagagaga tgaataaatg cacatcttca gaaacctcat cctgtgcttc tgttcaaaaa
     1441 aagcattcaa tgccgaatga aatgcaacat tttatgcccg agaagttcaa atgtgcattt
     1501 gcaaagcgca aaacaaccat cccaaattac attaccagca tgaaggaaat accgaagatt
     1561 gattttaaca aacaagacga aattatggag tcaaattcca acaaagaagt taaaaaagct
     1621 tttgctgatt ctggaaagtt tgttactaca tgtgggactc cagagtattt gtctaattat
     1681 tccataatag tttcctctga ccaacgtcag tattatgagg atgaattccg ggcagattac
     1741 agtgaatatc aggccatgta tgataagata cagatttcat gtacaccaat cattgaccta
     1801 gattcagaaa ggaagggatt ttccccagga tcaaaagaat accaagatat tactaaaaaa
     1861 atctcaatag aatatcagaa aatgcgacaa cttaatccta aattttgtga agaaaaaaat
     1921 aaatgtgtgt ttctttacaa caagctgatt cacattaaaa aattaataaa tgattttgac
     1981 aatcaaaaag taaaatcaac acaataatag agggtttaga caagaataaa tattgtttac
     2041 tgaaattaca aataacttgc tccaagtttc taaaggtatg gcatttgcca tttttgttaa
     2101 atccttggaa cagtatgtaa tttgtcttta tattcgtttt gtgcttccct acaatattga
     2161 agttgcatta tatggttctt aaaccaccaa tatttgtgtg tctgctacat atcccataat
     2221 attgtgaacc caatgtctat gaaataaagt tctacacata tgaaaataaa atgagcaagt
     2281 tgaaatactt ttggataatt agtctttttt ctggacagtc ttaaacttca aatagaggtt
     2341 tgggtattat tcatagtact tctttatatt ctgtgagaac atgagttaca tagtcaaaca
     2401 c
//
