LOCUS       XM_039098130            1082 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to prohibitin (LOC688815),
            mRNA.
ACCESSION   XM_039098130
VERSION     XM_039098130.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098130.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1082
                     /gene="LOC688815"
                     /note="similar to prohibitin; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 3 long SRA reads, 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:688815"
                     /db_xref="RGD:1584151"
     CDS             160..921
                     /gene="LOC688815"
                     /codon_start=1
                     /product="prohibitin-like"
                     /protein_id="XP_038954058.1"
                     /db_xref="GeneID:688815"
                     /db_xref="RGD:1584151"
                     /translation="MAAKVFESIGKFGLALAVAGGVVNSALYNVDAATDRFRGVQDIV
                     VGEGTHFLIPWVQKPIIFDCRSRPRKVPVITGSKDLQNVNITLRILFRPVASQLPRIY
                     TSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLIL
                     DDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAEL
                     IANSLATAGDGLIELRKLEAAEDIAYQLSRSRNIT"
ORIGIN      
        1 gttttatgac tactttaacg aagatagtga ggccagcatg acactaccta actctgaagg
       61 ctgagtcata aaaagaccgt gtaggcagta tgcgaggctg aggaattcat gtggaggtca
      121 gagtggaaac aggtgtgagc ggaagcaaca gaaggagtca tggctgccaa agtgtttgag
      181 tccatcggaa agttcggcct ggccttagca gttgcaggag gcgtggtgaa ctctgctcta
      241 tataacgtgg atgccgccac ggaccgattc cgtggcgtgc aggacatcgt ggtaggggaa
      301 gggactcact tcctcatccc ctgggtacag aagccaatca tctttgactg ccgctctcga
      361 ccacgtaaag tgccggtcat caccggcagc aaagacttgc agaatgtcaa catcacacta
      421 cgtatcctct tccggccggt ggccagccag cttcctcgta tctacaccag cattggcgag
      481 gactatgatg agcgggtgct gccatctatc accacagaga tcctcaagtc ggtggtggct
      541 cgattcgatg ctggagaatt gattacccag cgagagctgg tctccaggca ggtgagtgat
      601 gacctcacag agcgagcagc aacatttggg ctcatcctgg atgacgtgtc cctgacacat
      661 ctgaccttcg ggaaggagtt cacagaggcg gtggaagcca aacaggtggc tcagcaggaa
      721 gcagagagag ccagatttgt ggtggaaaag gctgagcagc agaagaaggc ggccatcatc
      781 tctgctgagg gtgactccaa agcggctgag ctgatcgcca actcactggc caccgccggg
      841 gatggcctga tcgagctgcg aaagctggaa gctgctgagg acattgctta tcagctctcc
      901 cgctctcgga acatcaccta actgccagca gggcagtccg tgctcctcca gctcccccag
      961 taaggccagc caggccaggg cctccatcgc tctgaatgac gccttccttc tgccccaccc
     1021 cagaaatcac tgtgaaattt aatgattggc ttaacatgaa ggaaataaag gtaaaatcac
     1081 tt
//
