LOCUS       XM_039100406             484 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to protein tyrosine
            phosphatase 4a1 (LOC688760), mRNA.
ACCESSION   XM_039100406
VERSION     XM_039100406.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100406.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..484
                     /gene="LOC688760"
                     /note="similar to protein tyrosine phosphatase 4a1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 41% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:688760"
                     /db_xref="RGD:1585248"
     CDS             56..484
                     /gene="LOC688760"
                     /codon_start=1
                     /product="protein tyrosine phosphatase type IVA 1-like"
                     /protein_id="XP_038956334.1"
                     /db_xref="GeneID:688760"
                     /db_xref="RGD:1585248"
                     /translation="MARMNRPAPVEITYKNMGFLITHNPINVTLNKFIEDWPFDDGAP
                     PSNQIVDDWLSLVKIKFPEEPSCRIAVRCVAGLGRAPGLVALALIEGRMNYEDAVQFI
                     RQKQRGTFNSKQLLYLEKYRPKMWLRFKDSNGHRNNCCIQ"
ORIGIN      
        1 tcaatttttt aattctttca gaaccctatt gggtgttttt ttaaactaaa ttaacatggc
       61 tcgaatgaac cgccctgctc cagtggaaat cacatacaag aacatgggat ttcttattac
      121 acacaatcca atcaatgtga ctttaaacaa atttatagag gactggcctt ttgatgatgg
      181 tgcaccacca tccaaccaga ttgttgatga ctggttaagt cttgtgaaga ttaagtttcc
      241 tgaagaacct agttgccgta ttgctgtccg ttgtgtcgca ggccttggca gagctccagg
      301 gcttgttgcc ctagcattaa ttgaaggtag aatgaattat gaagatgcag tacaattcat
      361 aagacaaaag cagcgcggaa ctttcaacag caagcaactt ttgtatctgg agaagtaccg
      421 tcctaaaatg tggctccgct tcaaggattc caatggtcat agaaacaact gttgcattca
      481 ataa
//
