LOCUS       XM_039103359             927 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to protein tyrosine
            phosphatase 4a1 (LOC688755), mRNA.
ACCESSION   XM_039103359
VERSION     XM_039103359.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..927
                     /gene="LOC688755"
                     /note="similar to protein tyrosine phosphatase 4a1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 61% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:688755"
                     /db_xref="RGD:1585253"
     CDS             487..927
                     /gene="LOC688755"
                     /codon_start=1
                     /product="protein tyrosine phosphatase type IVA 1-like"
                     /protein_id="XP_038959287.1"
                     /db_xref="GeneID:688755"
                     /db_xref="RGD:1585253"
                     /translation="MALMNRPAPVEVTYKMRFLMTHNPTNGTLNKFKEGVRVLDWPFD
                     DGAPLSNQIADDWLSLVKIKFREEPGCRIAVHCVTGLGRAPVLVALALTEGGMKYEAA
                     VQFIRQKRRGAFNGKQLWYLGKFHPKVWLCFKDSNGHRNNCCIQ"
ORIGIN      
        1 gacatattcc tcagttctgt ggtgttctcg gtcacacatt tatggagttt ctgaagggca
       61 gtggaaatta ctgccacgca cagcacgacc tctatgcagt caagtgaact gtagaaattc
      121 attactactc caccaaggag cccccataag agtggataac tggacacagt cgtgttgaat
      181 taaaatctgc agagcatttt ccaagagctc agagctggat ggggtaaacc tcagtggact
      241 ttctttgtat tgcctcagta ttactggatt gcctgtttct cccaactcat actcaaagca
      301 ttgagtatgt caagtggagt atattgaata ttgaagtaga cttcaggttg tttttttggt
      361 ttggtttggt ttggtttggt ttgtttttcg gtttttgttt ttgtttggaa tcatttctgt
      421 attcagtttt tttaattctt tcataaccct attgggtggt tttttttttt ttttgactaa
      481 attaacatgg ctctaatgaa ccgccctgct cctgtggaag tcacatacaa gatgagattt
      541 cttatgacac acaatccaac caatgggacc ttaaacaaat ttaaagaagg cgttcgtgtt
      601 cttgactggc cttttgatga tggtgcacca ctgtccaacc agattgctga tgactggtta
      661 agtcttgtga agattaagtt tcgtgaagaa cctggttgcc gtattgctgt ccattgtgtc
      721 acaggccttg gcagagctcc ggtgcttgtc gccctagcat taactgaagg tgggatgaaa
      781 tatgaagctg cagtacaatt cataagacaa aagcggcgtg gagcttttaa tggcaagcaa
      841 ctttggtatc tagggaagtt ccatcctaaa gtgtggctct gcttcaagga ttccaatggt
      901 catagaaaca actgttgtat tcagtaa
//
