LOCUS       XM_006251400            2223 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to motile sperm domain
            containing 1 (LOC686087), transcript variant X1, mRNA.
ACCESSION   XM_006251400
VERSION     XM_006251400.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006251400.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2223
                     /gene="LOC686087"
                     /note="similar to motile sperm domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 9 ESTs, 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 224 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:686087"
                     /db_xref="RGD:1586609"
     CDS             182..823
                     /gene="LOC686087"
                     /codon_start=1
                     /product="motile sperm domain-containing protein 1 isoform
                     X1"
                     /protein_id="XP_006251462.1"
                     /db_xref="GeneID:686087"
                     /db_xref="RGD:1586609"
                     /translation="MHQQKRQPELVEGNLPVFVFPTELIFYADDQSTHKQVLTLYNPY
                     EFALKFKVLCTTPNKYVVIDAAGAVKPQCCVDIVIRHRDVRSCHYGVIDKFRLQVSEQ
                     SQRKALGRKEVIATLLPSAKEQQKEEEEKRIKEHLTESVFFEQSCQPENRAVSSGPSL
                     LTVFLGVVCIAALMLPTLGDMESLVPLYLHLSVNQKLVAAYILGLITMAILRT"
ORIGIN      
        1 ttttaaaagt taatgacaga gactctgaca aaggagcagg gagcagtcgc agctgctttc
       61 cgaggagcca gtgttgctga gattgccaaa atgctttgga gtttttaact gaatctaaga
      121 aagtccaaaa tagacttgag actgtaaaga cagaagctgc agcaaggggg atacagtgcc
      181 aatgcatcaa caaaaaagac aaccagagtt agtggaaggg aatcttcctg tctttgtgtt
      241 tcccacggag ctaatatttt atgcagatga tcagtcaaca cataagcaag tgttgactct
      301 gtacaatccc tatgagtttg ccttaaagtt caaagttttg tgtacgactc caaataagta
      361 tgttgtcatt gatgctgctg gtgcagtgaa gccacagtgc tgtgtggata ttgtcattcg
      421 tcatagagat gttcgatcgt gtcactatgg tgtgatagac aaattccgtc tccaggtttc
      481 ggaacaaagc cagaggaaag ccttaggaag gaaagaggtt attgctactc ttctcccatc
      541 tgcgaaagaa caacaaaagg aagaagagga gaagagaata aaggagcact taaccgagag
      601 tgtatttttt gagcagtcct gtcaaccaga aaacagagca gtctcttcag gacctagttt
      661 gctaactgtc ttcctgggag tggtatgtat tgcggccctg atgctgccta ctctagggga
      721 tatggaatcg ctggtgcctc tctacctcca cttaagtgtg aatcaaaaat tagtggctgc
      781 ttatatctta ggtcttatca caatggctat acttagaaca tgaacaagga ttaaaactga
      841 cttctgaagt aaatttatct taaaatatga atgtggactg ccttttatct cttccactcc
      901 attaacacac tacaaattat ggaatgatta taaataactg caaatgtata atatatattt
      961 tcaattagtc tataatttta tttgaaggac tgtagcactt tatgttacag acaacaaaga
     1021 tacttctgag cgattgatat ctaggaaatt atttgaagac attcttttaa actctatacc
     1081 tattatgcaa ataactttag ttcaatgtta ttgttcttct tttgatttcg aagtcacttt
     1141 gataagggtc atgggtcctt caaagtttaa ggcctatatg agcaactgag ctgattgaac
     1201 ataaagtgac attgcctaga cacaagcacc gacattacta tgtaaatcat agacttcctc
     1261 ctagcattac aaggagttgc tgccaggttt cttaagcgaa tatattatag tcagtgtgtg
     1321 agggggttgg aaacataagg tacttactga gggatcatgc ttaccctgga ctcgtgacag
     1381 aagacaagat gttttaaaat tatctcgtga acttcaggac aggctgtcgt tcagagaaca
     1441 ggcccctcac agaagtagat tgctttccct atttggcctg agagttctaa agaaaggtag
     1501 gcatttttaa aattaattgg ttcatcctgg ttttacttct ggttaatcct taatgtatta
     1561 aggggaaaat cactttttgg ttttctccca agtcccttgc ttgcctgagt gtaagtgact
     1621 caccctggtt aggaatgtca gatgacaatt agtttctgag gacatgactt tttttttttc
     1681 gctttcaaac tcttaagcca agtagagaaa gccctaaata cctgtgtcta ttttatatca
     1741 gtcactggga cgttttttaa gtttttattt attcaagtaa atttaccaaa aaaaaaaaaa
     1801 gccccctaag cacaatgact tccatttctt gacagtgttc tctggcgtct cacgtctgtg
     1861 tgtttaactg ttgtcacagc aactgatctt cctcttggga tttttatctg aaagcacaat
     1921 gcatcgagtc tcttgaaaat cgaattctct tgtagctctt tttatggaat aaactttatg
     1981 cactgctaac gtaacattct caaggaatag acataaacac aaatgtatgc ctgaagctga
     2041 tttttttggg ggagggggca ggaaacgata ctctgcttct agaagctttt tgtttagtat
     2101 ttcataaatc attgtttaac catttgtgtg gagcataaac tattcagtgg atcatgtctg
     2161 tacattgtgt aatgactgaa aagcacataa atgaaatcta ctttgaactc aaaaaaaaaa
     2221 aaa
//
