LOCUS       XM_039100375            1177 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to Protein CXorf48 (Tumor
            antigen BJ-HCC-20) (LOC685790), mRNA.
ACCESSION   XM_039100375
VERSION     XM_039100375.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100375.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1177
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1177
                     /gene="LOC685790"
                     /note="similar to Protein CXorf48 (Tumor antigen
                     BJ-HCC-20); Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 long SRA read, and 99% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:685790"
                     /db_xref="RGD:1590178"
     CDS             257..676
                     /gene="LOC685790"
                     /codon_start=1
                     /product="cancer/testis antigen 55-like"
                     /protein_id="XP_038956303.1"
                     /db_xref="GeneID:685790"
                     /db_xref="RGD:1590178"
                     /translation="MLRILRRILTFFQRKTKPDGKLQLKDNATFKSARGIVTYLCTDY
                     GWINETIFFSVDVVCGNAPLNVGMNVIALVEKDETNHALKNIKVKTMSDPIYGIEPSE
                     ADRRLCIKCITAATQDSIYVSKETFFPIQLLSGGLCY"
ORIGIN      
        1 gggaaaaacc ggaaacctgg aagctgccgt tgaggtatcc tgttttttgg ctctcttctg
       61 ggttgtcttt cattgactga aatctcagtg aggccgaaga agcaaacttg aaaggatatt
      121 tttttttggt tcttcttttt tttttttttt tttttttttt ggagctgggg accgaaccca
      181 gggccttgct tgaaaggata ttttaagcac agtcagaagg cattggtgtt gcccaggcct
      241 ttgttagcat atcgctatgc tgagaatttt gcgaaggatt ttaaccttct ttcagaggaa
      301 gacaaagcct gatggaaagc tacagctcaa agataatgcc acatttaagt ctgccagagg
      361 aattgtgacc tatctctgca cagattatgg ctggattaat gaaaccatct tcttcagtgt
      421 tgatgtggtg tgtggcaatg ctccactgaa tgttggaatg aacgtcattg ctcttgtgga
      481 aaaagatgaa acaaaccatg ccttgaaaaa catcaaggtg aaaactatgt ctgatcccat
      541 ttatggtatc gagccttcag aagctgacag acgactttgc attaagtgca ttactgctgc
      601 aacacaggac agtatttatg tcagcaagga aactttcttc cccatacaac ttctttctgg
      661 aggtctgtgt tactagcatt gatgggagaa atggcgtggt ggacgacatc gtctttttca
      721 ccctggattc tctggttata cacctagact atatgacatt gtgaatgtgg tcactgtgga
      781 cagcatccaa ccatattgtt cttgtagagc agtgtcgatg accccagtgg aaatggtgta
      841 ttaaccatgc cttatagttc attttcagta ttatttctat ggttctagtt taataaaata
      901 atatgggcat gtaatccaaa gatctatgaa ctatgagtct ttttttaaca ctctggtaat
      961 tttattggca acacgactca cttcaggaag gtaccttgtc aattaaaaaa catactgtat
     1021 tgaaacgtgc ttgagcatag aaatagccct gccctcaggt aaatgcacca ttctccataa
     1081 actgaaccag gttttctgct gccagtggcc ttttggacct ctaatcctca tgcggaagca
     1141 aaacatttag ttcaagatcc caggagtgaa caggaaa
//
