LOCUS       XM_006248350            2124 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to TPA-induced transmembrane
            protein (LOC685680), transcript variant X1, mRNA.
ACCESSION   XM_006248350
VERSION     XM_006248350.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001427038.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006248350.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2124
                     /gene="LOC685680"
                     /note="similar to TPA-induced transmembrane protein;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 ESTs, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 20 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:685680"
                     /db_xref="RGD:1591333"
     CDS             39..689
                     /gene="LOC685680"
                     /codon_start=1
                     /product="TPA-induced transmembrane protein"
                     /protein_id="XP_006248412.1"
                     /db_xref="GeneID:685680"
                     /db_xref="RGD:1591333"
                     /translation="MEGSRTPSSREELELSIVEGQQEELTPLNSLQIQPCSTQDPSPA
                     QVDQERPWSSCNKSVVGKCKLWMAIVSIFLCFTIVVIISLCLVGVTYIDEDENEMPEL
                     SSNKTFFIVLKIPEECANEEELHHLLTKRLTDMYRQSPALNRFFTSADIMDFSVENAT
                     VTYHLQFGVPSEDDDFMKYMMSEELVLGIMRQSFHDKNLSTCENLGLDPESLLLYE"
ORIGIN      
        1 tcttggctct cagtggagcc tcggtcttcc gagttgccat ggaagggtcc aggaccccat
       61 catcccggga agagctggag ctctcgatag tggaggggca gcaggaagaa ctgacgcctc
      121 tgaacagcct tcagatccag ccttgctcca cccaggaccc tagccccgca caggtggacc
      181 aggaaaggcc ctggagttcc tgtaacaaga gcgtggttgg aaaatgtaaa ctgtggatgg
      241 ccattgtgag catattcctg tgtttcacta tagtggtcat tataagcctg tgccttgtag
      301 gagtgactta tatagatgaa gatgaaaatg aaatgcccga attgtcatca aacaaaacat
      361 ttttcatcgt gctcaagatt ccagaggagt gtgctaatga agaggaattg catcatttgc
      421 tcactaagag gctcacggac atgtatagac agtccccagc tctgaaccgt tttttcactt
      481 ctgctgatat catggatttc agtgttgaaa atgccacggt aacctatcac ttgcagtttg
      541 gggttccatc tgaagacgat gactttatga agtacatgat gagcgaagag ttggtgctgg
      601 gcattatgcg acagagtttc cacgataaga atttatctac ttgtgagaat ctcgggcttg
      661 acccagaatc gctcctgctc tatgaatgaa gcgatggggg ttgtgtgaga aggcagtgct
      721 ctgctgagtc tcagactgaa gacaattcag aagcatatct agcagtgacc tgaaagagga
      781 gacagccctc ccactgattc tacacagatg tgaagtctgg gtccacctca gaatggcagt
      841 ttatgagagc tgcctcagct gggttcagga gctagaggtc tggggtgaat ctaagatccc
      901 gcaacatggg attctcactg ctttgaagta ctggcagctt ctactagtgc ataaatgctt
      961 ttcctgtgtt gttgcataga taagcatctg agtttgttct aggcaggttc tgttaaccag
     1021 agctgatggg gcaagtcaaa gctgcatcag ggtagccagg ggaaagaggg agaaccaacc
     1081 agttgttcac tgaagccctc tccccactca caattatatc tggtggacct ttgatccagg
     1141 gcaagaggaa aaggaagaca actccaagac ctaaggagtg tagcccttca tcttcttcca
     1201 ctacctagac ctgacagctg agctcagtca ggcttatcgc tgagcattac atatagaaag
     1261 atgatcgaaa tgtcttaatt gtttctcatc tctgctgtgg tcctgagatg actctatctt
     1321 ttttttcttt ttgaaaacat atgtctctga gttttgatca ggtaccatct tttaagattg
     1381 ccacccatgt gggttattat tattattatt attattatta ttataaaagt catcaaagga
     1441 tcattaagac tgcttaaatt tctgctattg ataccacaca ctggctttgt gttgcttggt
     1501 atcaccaacc tccccgtagg atttaaattc ttgaggtgtt gtttgcgtgt cttcctacag
     1561 atgatcgctg agcagagaat ttctgtcctt ttgaaactgt cccaaatgat atggcagtcc
     1621 cttggagggc cagaaggaag ctaatgactg tatcagtcac ctgtggatat aaattgcctg
     1681 tcgtaaaaga actgaatggt tgttttgttg ggggaaattg ccttcctgga aattttctgg
     1741 gagagttagt ttcattgttg tataatgaga aattccccag gctgatacct tagattagtc
     1801 aggtctctat ggcagacaac tgtgcatgag tatgtgtcaa gtgtagggtt ctgaacactg
     1861 tgaacttgtt ttcttattta aggactatat actatagtaa tatagtataa tgataatggc
     1921 tacaatgtaa cttatggttt catttttcag gatagttcct taagctcctg aaacaggtgg
     1981 agttttcttc ttccccttta ttttatttaa ttttattttt ttacatgtca actgtgaact
     2041 tccgtgtccc tttacttttt ctaaagtaat gaggaatttt aatatataat gatctaaaag
     2101 catttacaat aaactatttt tttt
//
