LOCUS       XM_039096479            1182 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to protease (prosome,
            macropain) 28 subunit, alpha (LOC685434), mRNA.
ACCESSION   XM_039096479
VERSION     XM_039096479.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1182
                     /gene="LOC685434"
                     /note="similar to protease (prosome, macropain) 28
                     subunit, alpha; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:685434"
                     /db_xref="RGD:1593823"
     CDS             205..882
                     /gene="LOC685434"
                     /codon_start=1
                     /product="proteasome activator complex subunit 1-like"
                     /protein_id="XP_038952407.1"
                     /db_xref="GeneID:685434"
                     /db_xref="RGD:1593823"
                     /translation="MATLRVHPEAQAKVDVFHEDLCSKTENLLGSYFPKKISELDAFL
                     KEPALNKASLSNPKAPLDIPVPDPVKEKEKEEWKKQQEKEEKDEKRKGNEDNKCPPCG
                     PVKCNEKIVVLLQCLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELM
                     TSLHTELEGFQISKYFSERGDTMAKAAKQPHMGDYRQLENELDEAEYQETRMMVMEIY
                     NAYPEEL"
ORIGIN      
        1 gtcctggata ccccaacaca cctgaaaagc aagatttaga tttaaaatca catctcatga
       61 tgatgataga agactttaga aaggacataa ataactcact taaagaaata cagacaaacc
      121 caggaaggcc atggagattt cgagctgtgc ttttgctttc caaccccagg ctccgtgtgc
      181 ggcacttagc ccctggctct ggccatggct acactgaggg tccatcccga agcccaagcc
      241 aaggtggatg tgtttcatga agacctgtgt agtaagacag agaacctgct tgggagctat
      301 tttcccaaga agatctcaga gttggatgcc ttcttaaagg agccagctct taacaaagcc
      361 agcctgagca atccgaaggc tccattggac atcccagtcc ctgatccagt caaggagaaa
      421 gagaaggaag agtggaagaa gcaacaggag aaggaagaga aggacgaaaa gaggaaaggg
      481 aacgaagaca acaaatgtcc tccctgtggc ccagtgaagt gcaatgagaa gattgtggtc
      541 ctcctgcaat gcctaaaacc tgagatcaag gatgtcattg agcaactcaa tctggttact
      601 acctggttgc agctacagat acctcggata gaggatggga ataattttgg tgtggctgtc
      661 caggaaaagg tgtttgagct gatgaccagc cttcatactg agctggaagg cttccagatc
      721 tctaagtact tctccgagag gggtgacacc atggccaaag cagccaagca gccccacatg
      781 ggtgattatc ggcagctgga aaacgagctg gacgaggcgg agtaccagga gacccgtatg
      841 atggtcatgg agatctataa cgcttatcct gaagaacttt gagaagctca agaagcccca
      901 tggagagaca aaggggatga tctattgagc cctcctcact cattctatga tgggtatagc
      961 agaaaccttc ctgctcttga ctaggaactg tagactgtac ccagtcttcc tgctggtgtt
     1021 tcctccctcg ctctgtctcc caaacataat aaatacagag ttgcccacca aaaaaaaaaa
     1081 aaagaaagaa agaaagaaag aaagaaagaa agaaagaaat acaggagaac acaggtaaat
     1141 aggtagaagc ccttaaagag gaatcacaaa attcccttaa ag
//
