LOCUS       XM_039103454             887 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to small nuclear
            ribonucleoparticle-associated protein (LOC685256), mRNA.
ACCESSION   XM_039103454
VERSION     XM_039103454.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103454.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..887
                     /gene="LOC685256"
                     /note="similar to small nuclear
                     ribonucleoparticle-associated protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 21 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:685256"
                     /db_xref="RGD:1596440"
     CDS             34..648
                     /gene="LOC685256"
                     /codon_start=1
                     /product="small nuclear ribonucleoprotein-associated
                     protein N-like"
                     /protein_id="XP_038959382.1"
                     /db_xref="GeneID:685256"
                     /db_xref="RGD:1596440"
                     /translation="MEDSSFGAFKAFDRCMNLILCDCDEFRKIKPENAKQPECEEKQV
                     LGLVLLRGENLVSMTVEGSPPKDTGIARVTLAGAAGGPGVGRAAGRRVPACVPIPQAA
                     AGLAGPVQGVRGPHQQVMTPQGRGTVAPAAAAATSSIAGAPAQYPPGQGPPPPPVGRA
                     TPSPGIMAPLPGMRPPMGPPIGLSPAQGTPIGMPPPGMRPLNRN"
ORIGIN      
        1 attgattata tagaatgaga tatattctgc aagatggaag actcttcatt tggtgccttt
       61 aaggcttttg acaggtgtat gaatttgatc ctctgtgatt gtgatgagtt caggaagatc
      121 aagccagaga atgcaaaaca accagaatgt gaagaaaaac aggttttggg tctggtcttg
      181 ctacgtgggg agaacttggt ttccatgact gtggagggtt cacctcctaa ggatactggc
      241 attgctcgtg tgacacttgc tggtgctgca ggtggccctg gggttggaag agcagctggc
      301 agaagagtac cagcatgtgt acctattccc caagctgctg ctggattagc aggccctgtc
      361 caaggagtta gaggcccaca ccagcaggtc atgaccccac agggaagagg cactgttgca
      421 cctgctgctg ctgctgctac tagtagtatt gcaggagctc cagcccagta cccgccagga
      481 cagggacctc cacctccacc tgtaggcaga gcgaccccat ctccaggcat tatggctcct
      541 ctgcctggta tgagaccacc catgggccca ccaattggcc tttcccctgc tcaagggaca
      601 cctataggca tgccccctcc aggaatgaga cccctcaaca ggaattagag gcccacctcc
      661 cccaaaaatg catccaccaa gaccctaagg tacagttgct caatctcgac cctctcttcc
      721 cctaaaatgc ttcttgtgaa actgtgtagc ctgcaagctt ttgacccctc ttactgcatt
      781 aactacagaa aataaataca tagagcaatt gaattgaaaa tgaaggaagg aagaagagaa
      841 gataagagaa aagaaaagaa agaaagctaa gcaagccagg ggagcaa
//
