LOCUS       NM_001394392            1089 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus paired immunoglobin-like type 2 receptor beta
            like 1 (Pilrbl1), transcript variant 1, mRNA.
ACCESSION   NM_001394392 XM_017598454
VERSION     NM_001394392.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Apr 16, 2021 this sequence version replaced XM_017598454.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.47369.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760400, SAMEA5760476
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-173               JAXUCZ010000012.1  24435292-24435464   c
            174-557             JAXUCZ010000012.1  24434613-24434996   c
            558-747             JAXUCZ010000012.1  24432256-24432445   c
            748-778             JAXUCZ010000012.1  24430494-24430524   c
            779-1089            JAXUCZ010000012.1  24429646-24429956   c
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..1089
                     /gene="Pilrbl1"
                     /gene_synonym="RGD1565960"
                     /note="paired immunoglobin-like type 2 receptor beta like
                     1"
                     /db_xref="GeneID:685157"
                     /db_xref="RGD:1597726"
     exon            1..173
                     /gene="Pilrbl1"
                     /gene_synonym="RGD1565960"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..760
                     /gene="Pilrbl1"
                     /gene_synonym="RGD1565960"
                     /codon_start=1
                     /product="similar to paired immunoglobin-like type 2
                     receptor beta precursor"
                     /protein_id="NP_001381321.1"
                     /db_xref="GeneID:685157"
                     /db_xref="RGD:1597726"
                     /translation="MALLVSLPEQNLAMAWILLLLLSAACLHTGNSLGYPKEYDYGVN
                     QPEHLTGIQGGSIEIPFSFYFPWELAKDPNMSIAWRWKDFFGEAIYNSTLLLFHEHFK
                     GRLILNWTQGETSGVLRILNLKKNDQSTYFGRVFLQTTEGMKFWQSMLGTKLIIHALT
                     TTPGSPSIIPSAIPTAGLEDTRDQRNPSLLNLGVMVGMVMAKVVVIMPLCGWMIFLWW
                     KQRPAE"
     exon            174..557
                     /gene="Pilrbl1"
                     /gene_synonym="RGD1565960"
                     /inference="alignment:Splign:2.1.0"
     exon            558..747
                     /gene="Pilrbl1"
                     /gene_synonym="RGD1565960"
                     /inference="alignment:Splign:2.1.0"
     exon            748..778
                     /gene="Pilrbl1"
                     /gene_synonym="RGD1565960"
                     /inference="alignment:Splign:2.1.0"
     exon            779..1089
                     /gene="Pilrbl1"
                     /gene_synonym="RGD1565960"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgagcatgt gtttttattt accctgattc tctctggact gctgagtgct ccagtgtccc
       61 tagacaggtc atccttgact tcctgatggc cctgctggtc tcacttcctg aacagaatct
      121 ggctatggct tggattctcc ttcttttgct gtcagcagca tgtctgcaca ctgggaattc
      181 attaggatat ccaaaagagt atgactatgg tgtcaaccaa ccagaacacc tcactggaat
      241 ccaaggtggc tccatcgaga tccccttctc cttctacttc ccttgggagt tggccaagga
      301 tccaaatatg agcatagcct ggagatggaa ggatttcttt ggggaagcca tctacaactc
      361 tacactgctt ttatttcatg agcattttaa gggccggctc atcttgaatt ggacacaggg
      421 tgagacatct ggagtcctca gaatcctgaa cttgaaaaag aatgaccagt ccacatactt
      481 cggccgagtt tttctgcaaa caactgaagg catgaagttt tggcagtcaa tgcttgggac
      541 caaactcatc attcatgctc tcactactac cccagggagc ccctccatca tcccctctgc
      601 aatccccaca gctggcctgg aggacacaag ggaccagagg aatccttcac tgctgaactt
      661 gggagtcatg gttgggatgg tcatggccaa agttgtggtc atcatgcccc tctgtggatg
      721 gatgatcttc ctgtggtgga aacaaaggcc agcagagtaa agcctaaagc ctagtaaggc
      781 tctcctgcta ggatctctca ccagggaggc aagttcacat caaagtagtt attggtgatt
      841 acacacctgc atcccacagc catccgtgtc ttctctctgg aagtcagagc taatgactgc
      901 aggattctcc tgtgaaagtc attcttggat aacccccact tctgtcatgg ggactccgac
      961 atgctctcct tggaaccaag gtcctcctgt gtgtctctgg gcctgagagc ctggctgtgc
     1021 ttgctgttct ctctctgttc atggcgttat tgacactttt aataaatatc ttactcccag
     1081 gaatccaga
//
