LOCUS       NM_001408963            1012 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus Lipocalin like (Lcnl), mRNA.
ACCESSION   NM_001408963
VERSION     NM_001408963.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.352925.1,
                                           SRR22582416.1232802.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16418971, SAMN16418988
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-406               JAXUCZ010000003.1  29870542-29870947
            407-540             JAXUCZ010000003.1  29872484-29872617
            541-611             JAXUCZ010000003.1  29872972-29873042
            612-719             JAXUCZ010000003.1  29873123-29873230
            720-821             JAXUCZ010000003.1  29874866-29874967
            822-1012            JAXUCZ010000003.1  29875114-29875304
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..1012
                     /gene="Lcnl"
                     /note="Lipocalin like"
                     /db_xref="GeneID:681186"
                     /db_xref="RGD:1583505"
     exon            1..406
                     /gene="Lcnl"
                     /inference="alignment:Splign:2.1.0"
     CDS             317..850
                     /gene="Lcnl"
                     /note="vomeronasal secretory protein 2; rCG45447-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC681186 precursor"
                     /protein_id="NP_001395892.1"
                     /db_xref="GeneID:681186"
                     /db_xref="RGD:1583505"
                     /translation="MQLLTLTAGLGLLSLVPAMMPPLSPATTEKLLGKWHIKRWAGDM
                     PIPEWRWKDPLPPFTFERNGLDELEFRMNLTKPIGCIQYKLPLYEGEDPGTFLTWWRH
                     VIYIHFLPGKSFAIAYFRGKMNYQYYQMMMLMGRTLKADPDAPRIFKEFVMSKMPQTG
                     KIIIPPHVEACELVQDS"
     exon            407..540
                     /gene="Lcnl"
                     /inference="alignment:Splign:2.1.0"
     exon            541..611
                     /gene="Lcnl"
                     /inference="alignment:Splign:2.1.0"
     exon            612..719
                     /gene="Lcnl"
                     /inference="alignment:Splign:2.1.0"
     exon            720..821
                     /gene="Lcnl"
                     /inference="alignment:Splign:2.1.0"
     exon            822..1012
                     /gene="Lcnl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtgtgctt gcatcaccct tgtggctcca aattcctagg tagggcactt cccacgctgg
       61 gaatattctc actggaccag ggtcctgaga cgtgccagag gcagtcatga ggaaggctaa
      121 ttctacaaat tagctcacct attcacatcg atccaaacaa aacttcagtc tcctggacag
      181 aggggtgtgg acaatgactt tggtgtggat tggggaaggc aggattctgc ttccagagca
      241 atcctgcaag tcaagcagca ggagcagcag gagcagcagc agctgagagg ccaggagcac
      301 agagctgagc tggaccatgc agctgctgac actcactgca gggctggggc tgctctcctt
      361 ggtccctgcc atgatgcctc ctctgagtcc tgccactact gagaagctct taggcaagtg
      421 gcacataaag cgctgggcag gagacatgcc tatccctgaa tggagatgga aggacccact
      481 gcctcccttc accttcgaaa gaaacggtct tgacgagctg gagttcagga tgaacctgac
      541 gaaacccatc ggctgtattc agtacaagct gcctctgtat gagggggagg accctggcac
      601 attcctcacg tggtggaggc atgtcatcta catccacttc ctgcccggga agagcttcgc
      661 cattgcctac ttcaggggca aaatgaacta tcagtactac cagatgatga tgctcatggg
      721 ccgcaccctg aaagctgacc cagatgctcc gaggatcttc aaggagtttg tgatgagtaa
      781 aatgccccaa actggaaaga tcattatccc tccccatgtt gaagcctgtg agttggtcca
      841 agattcctag tgcactgagg gagtgctgca gagtgcatgc aggaagcagg agctgggacc
      901 ctggctgacc tctgcaccta catgcagaac tctcagtgtc caagagcaca ggcccaacac
      961 ctactcgtcc cccataagtc tgcattcaat aaatttggtc gatatccctc aa
//
