LOCUS       XM_039090008            1673 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to paired immunoglobin-like
            type 2 receptor beta (LOC681182), transcript variant X2, mRNA.
ACCESSION   XM_039090008
VERSION     XM_039090008.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090008.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1673
                     /gene="LOC681182"
                     /note="similar to paired immunoglobin-like type 2 receptor
                     beta; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 24 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:681182"
                     /db_xref="RGD:1583509"
     CDS             206..868
                     /gene="LOC681182"
                     /codon_start=1
                     /product="paired immunoglobulin-like type 2 receptor beta
                     isoform X1"
                     /protein_id="XP_038945936.1"
                     /db_xref="GeneID:681182"
                     /db_xref="RGD:1583509"
                     /translation="MKAQDAQGCPLNPCSGFRFSLSFPGNSGGYTRKNYFGVNQPAVL
                     SGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLIL
                     NWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHDLSTTMR
                     TPSIITSADPTAGLENIRGQRNPSLLNLGGIIGMVVAKVVVIIPLYGWMISLWWKQRP
                     AE"
ORIGIN      
        1 ctctaacagg gactgaacca gaggagggaa cagagtggct gggaaaagtg ggtgtcttgt
       61 gtccagtgtc tggtagagga gccagccagg tctctctgac ctaagagttc aacactcaga
      121 gtaagcccaa cccaaccctt ccctcttttt gctgtccccc cagccatagg gacagtcctg
      181 ccctgtgtcc cacacctccc ttcacatgaa ggcacaggat gctcagggtt gtcctttaaa
      241 tccctgcagt ggcttcagat tctccctgtc cttcccaggg aactcaggag gatacacaag
      301 aaaaaattac tttggggtga accaaccagc tgtcctctct ggagtccagg gtggctccat
      361 tgagatcccc ttctccttct acttcccctg gaagttggcc aaggatccgc agatgagcat
      421 agcctggaga tggaaagaag tccatgggga attcatctac cagtccactc tatctttcat
      481 tcatgagcac ttcaaggacc ggctcatcct aaactggaca cagggtcaga cattcggagt
      541 cctcagaatc ctgaacttga aggagaatga ccaggccaca tacttcagcc aagtttgcct
      601 gcaaacaaca gaaggcatga aatgttggca gtctattcct gggacaaaac tcattgttac
      661 acatgatctc agtacgacca tgaggacccc ctccatcatc acctctgcag accccacagc
      721 tggcctggag aacataaggg gccaaaggaa tccttcactg ctgaacctgg ggggcatcat
      781 tgggatggtc gtggccaaag ttgtagtcat catccccctc tacggatgga tgatctctct
      841 gtggtggaag caaaggccag cagagtaacg cctaaacccc agccaggctc cggatgagac
      901 atcatccctt cttcctcaac taagagacct cccagtgtta ggatctctca acagggagat
      961 tagtttatat caaaatagtt attggtgacc acatactctg catcccacaa cctcccatgt
     1021 gattctctct gggaatcaga attctcagaa ttcttcagaa ttctgctgtg aaagatcacc
     1081 atacttggat aacccccact tctgccacat ggtctctgaa accctctgct tgaaaccaac
     1141 ttcatctcgt atgtctctgg gccagagagc ctgactgtgc tcttcattct ctgcccatgg
     1201 acttattgac actttcaata aatacctcac ttcccgcaat ccatctccat gtctctcctg
     1261 agcccgctca taacacaact tagagagtgg cacactgtgt ctagcatgtg ggtcactggg
     1321 atagatataa ggacaatagt ctgcattgaa accaacagcc tgataatcaa ggttcacctc
     1381 ttccttactc tcaggaggct gacatctcat ccagagccca acccccaccc cacatgcttc
     1441 acatcaagtg tcagaccaag gcttcctttc ctcacaagcc caactgcatg cactcacatt
     1501 ctcatttcct accatgtcga cattcttgac tctgggttct ctcctagaat aggacatttg
     1561 tcgcaagtcc aatctgtcct aacatttgat agtcatcaca tcaacttcta ataaaaccct
     1621 gtggggacac agaaaaccat ccagagtgac ccaggaggaa tgaaaccagg ctt
//
