LOCUS       XM_006244494            2553 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to natural cytotoxicity
            triggering receptor 2 (LOC680920), transcript variant X1, mRNA.
ACCESSION   XM_006244494
VERSION     XM_006244494.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244494.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244494.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2553
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2553
                     /gene="LOC680920"
                     /note="similar to natural cytotoxicity triggering receptor
                     2; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     4 samples with support for all annotated introns"
                     /db_xref="GeneID:680920"
                     /db_xref="RGD:1585869"
     CDS             282..953
                     /gene="LOC680920"
                     /codon_start=1
                     /product="triggering receptor expressed on myeloid cells
                     1-like isoform X1"
                     /protein_id="XP_006244556.2"
                     /db_xref="GeneID:680920"
                     /db_xref="RGD:1585869"
                     /translation="MAWEATYLLSSMLLLLLASGSWAQDPEVFRTWEGKTVSVTCWHN
                     PGYRFNEKFWCKETSEVACQPLVSSVSRGAEKLRLSIQEDSRFSFFTVTMTELETADS
                     GIYHCGFFGNQRNFIYILRTIHLVVSKVSSDVSIPDIIPIEKLTAVSILVTTKYSPSD
                     TTTTPSLPKSTAVVSSPDPEVTVKNGTDPTRGCVFSVVPVVCALLIKNVIFIVLFAVT
                     QRSFG"
ORIGIN      
        1 cctcagccct ggccttatga ggcaggagat cacagagtct ctgagagcct ttacctagtt
       61 cagtacaggg acctagactc aaagcctgta gctgatggat acacaggacc acactggcct
      121 tacctatctt ccctcgtgtc cacagaggtc tccggcttcc tcagcagttc atgcaggact
      181 ggctgtggtg gctcctgaat cctgtccagg actgctctcc tctcttcaga gcatccctcc
      241 gttcttgctc ccaccccctc tctcaggaag agaactgaac gatggcctgg gaggccacat
      301 acctgctctc ctcaatgctg ctgctgctcc tggcctcagg ctcctgggca caggacccag
      361 aggtatttcg aacatgggag ggcaagactg tttctgtgac atgctggcat aatcccggat
      421 accgcttcaa tgagaagttc tggtgtaagg aaacatcaga agtcgcttgt caacctttag
      481 tgtcgagtgt cagcagaggt gctgagaagc taagactctc catccaggaa gattctcggt
      541 tcagcttctt cactgtcacc atgactgagc tagagacggc cgactcgggc atctatcact
      601 gtgggttctt tggaaatcaa agaaacttca tctatattct cagaactatt cacctggtgg
      661 tatcaaaagt ttcttcagat gtgtccattc ctgacatcat tcctattgaa aagctgactg
      721 cggtttccat cctcgttacc acaaaatact cgcccagtga cacaactacg accccatccc
      781 tacccaagtc cactgctgtt gtttcctctc ctgatcctga agtcaccgtc aaaaatggga
      841 cagatcctac caggggctgt gtattcagtg tggttcccgt ggtctgtgca cttctcatca
      901 agaatgtgat cttcatcgtc ttatttgctg tcacacagag gtcatttgga tgacagatct
      961 tgaagctaca caatagtgac cttcagccat gtctctcaca gaaggagctg acatgggggg
     1021 ctaaggagga cctgtgacac gaattgagcc tgtaatcata ggtgacatct aaggctcagg
     1081 atgtccccac ctggccctgc ccaccctcct catctcatcc atcatttagg gaacgtattc
     1141 tgcaccctca ggaaagagga accaattcct agaacactct agtcattccc cctaaatagg
     1201 tgggtttgtc tgaaataaag acagagcaaa gtacttcccc ctgtctcctt ttggggcagt
     1261 catgaagatt atggtttcca tgctatcccc atccctcgtc cttcccctgg atggtacaat
     1321 tctagccact gggcaggtcc cttgctcatg aagcagcctg cactcccacc tctggggcct
     1381 tctgctctgg gagtcagaca ctcagatttc tgccttcacc tgtgctcctc ggaacactcc
     1441 caaccatgga tcaagaagac aagatcccac cttgacaata atgcaactgg gagagaggaa
     1501 tcaagataaa ctgggaaact gctgttgcct gggaaacacc tagagaagca gatggcatct
     1561 gtaggtttgg atcagtacag cacatcaaca tgctgtgttc attttatcat tgactcctca
     1621 gtgcatccca tgagcgtcaa ggagtgtgtg agcagagtga ggctgcagga gtgaggccat
     1681 cacctcttgg caagaatgaa atgtagagag ctcccttggt gagacaggga gttagaggct
     1741 ccagaggcag ggggatggag agccaggctc tgctgctagc tgaatgcctt ttggcctgga
     1801 ctgaggcagg ggccagcatt gcaagggtcc caacccaagc tgtccccctg tgtgcctctg
     1861 cctcccaccc accttctttc acctctcagt ctcctcccag gtactctatg gctcaggcgc
     1921 tttctctggg acatatcagc actttcttgt tcctatctct ttggactcta caggcaaagt
     1981 ggccccatgg ggcatggggg gaggatggta catgaactca ttctacgtca gcaatggctg
     2041 gagccaactt catcccaagg ttcccaagag caaacacatc accacatagc atccagctca
     2101 tgtgatctca cccagaaggc tgaggagtgg ctggacccct catctcaggt caggaaagca
     2161 cattcctgtc agggagactt ccacctcctc ctgtgaagat cctaggtcct aaggcatgct
     2221 tcagtctcat aaggatggtt cattgtgaac atggctttct gtgtaattcc ccccctgggg
     2281 tggcattgat gaggcacggg gtatttacag ccctatgaca tctagtgtgt ccggagaggc
     2341 ctcagtggaa ttcatctatg ttggtgttct gggtgggtct ttggagaatt gatccagaaa
     2401 atggtcacct cagtatgatg tatgattttt tgtgtgttcc taaagaacca agctgttatt
     2461 tcctgggctt ttccacccag gacttctctg atccctggag taatgactct gagtcttctt
     2521 gtttattaat aaatgcctac atcataagct tca
//
